G1536221


Basic Information

Item Value
gene id G1536221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 29908481 ~ 29908723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1758379
GTGCAATATCATGCGGAAACTTGAGGAGATGGCtacagatgaatggcatgacaatgggcctcaggatctcatcacggtatctctgtgcattcaaattgccattgataaaatgcaattgtgttcattgtccgtagcttatgcctgccaataccataaccccaccaccacaatgggacactctgttcacaacgatgACATTATCAAACttctcgcccacacgacaccatatcTACAGTCTGCCTG

Function

NR:

description
hypothetical protein EH28_01411

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1758379 True 243 lncRNA 0.46 1 29908481 29908723

Neighbor

gene id symbol gene type direction distance location
LOC110495972 NA coding upstream 1173252 28732589 ~ 28735229 (+)
LOC110495968 LOC106574333 coding upstream 1235788 28646581 ~ 28672693 (+)
LOC110496787 LOC106575108 coding upstream 1264385 28633811 ~ 28644214 (+)
LOC110495966 LOC106575106 coding upstream 1313273 28521480 ~ 28595208 (+)
LOC110496786 NA coding upstream 1428813 28474349 ~ 28479668 (+)
zgc:174945 LOC106574385 coding downstream 273509 30182232 ~ 30186368 (+)
cckbra LOC106575124 coding downstream 324968 30233691 ~ 30254904 (+)
LOC118940974 LOC108266561 coding downstream 609897 30518620 ~ 30519442 (+)
LOC110496792 cars2 coding downstream 626291 30535014 ~ 30539520 (+)
LOC110495985 LOC106588159 coding downstream 818084 30726807 ~ 30749687 (+)
G1536204 NA non-coding upstream 9996 29898185 ~ 29898485 (+)
G1536172 NA non-coding upstream 30404 29877731 ~ 29878077 (+)
G1536169 NA non-coding upstream 31942 29876309 ~ 29876539 (+)
G1535440 NA non-coding upstream 457288 29428870 ~ 29451193 (+)
G1535334 NA non-coding upstream 636393 29271803 ~ 29272088 (+)
G1536222 NA non-coding downstream 32 29908755 ~ 29909061 (+)
G1536233 yo84 non-coding downstream 6603 29915326 ~ 29915546 (+)
G1536247 NA non-coding downstream 13009 29921732 ~ 29921933 (+)
G1536250 NA non-coding downstream 15186 29923909 ~ 29924308 (+)
G1536252 NA non-coding downstream 15707 29924430 ~ 29924675 (+)
G1534495 NA other upstream 1095378 28812829 ~ 28813103 (+)
G1534488 LOC106574337 other upstream 1103808 28804028 ~ 28804673 (+)
G1533121 LOC106574322 other upstream 1870005 27974813 ~ 28038476 (+)
LOC110495958 LOC106574318 other upstream 1958259 27943362 ~ 27958807 (+)
G1536720 NA other downstream 388408 30297131 ~ 30297346 (+)
G1537251 NA other downstream 913785 30822508 ~ 30828046 (+)
LOC110496006 LOC106588175 other downstream 1660168 31568375 ~ 31572239 (+)
LOC110496008 LOC106588176 other downstream 1669444 31578096 ~ 31580320 (+)
G1538208 LOC106588182 other downstream 1844987 31753710 ~ 31754191 (+)

Expression


Co-expression Network