G1536932


Basic Information

Item Value
gene id G1536932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30389023 ~ 30408170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1759113
tcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggtgtgatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggacatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccataaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagagtgtgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccacccttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcgtctctgatcaatcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgctgagtggcctttcagg

Function

NR:

description
putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1759113 True 987 lncRNA 0.43 2 30389023 30408170

Neighbor

gene id symbol gene type direction distance location
LOC110495975 LOC106574338 coding downstream 547424 29414177 ~ 29841599 (-)
LOC110495976 NA coding downstream 891551 29496293 ~ 29497472 (-)
LOC110496788 gart coding downstream 1114290 29253527 ~ 29274733 (-)
LOC110495974 LOC106574337 coding downstream 1583668 28771350 ~ 28805355 (-)
LOC110495973 LOC106574336 coding downstream 1620960 28760672 ~ 28768063 (-)
LOC110496790 lig4 coding upstream 9673 30417843 ~ 30441655 (-)
LOC110495980 irs2 coding upstream 48696 30456866 ~ 30476059 (-)
LOC110496791 cars2 coding upstream 81513 30489683 ~ 30497834 (-)
LOC110515180 NA coding upstream 90013 30498183 ~ 30502180 (-)
ndufv1 LOC106588156 coding upstream 198524 30606694 ~ 30612658 (-)
G1536930 NA non-coding downstream 839 30387939 ~ 30388184 (-)
G1536927 NA non-coding downstream 2691 30386037 ~ 30386332 (-)
G1536877 NA non-coding downstream 76363 30307668 ~ 30312660 (-)
G1536708 NA non-coding downstream 101761 30287055 ~ 30287262 (-)
G1536680 NA non-coding downstream 119343 30269439 ~ 30269680 (-)
G1536962 NA non-coding upstream 14889 30423059 ~ 30506111 (-)
G1536987 NA non-coding upstream 47506 30455676 ~ 30456795 (-)
G1537010 NA non-coding upstream 96021 30504191 ~ 30505718 (-)
G1537032 NA non-coding upstream 128196 30536366 ~ 30536579 (-)
G1537058 NA non-coding upstream 154838 30563008 ~ 30568315 (-)
G1536703 NA other downstream 104261 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2036405 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2352407 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2474503 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 2590410 27754174 ~ 27798978 (-)
G1537022 NA other upstream 111722 30519892 ~ 30525373 (-)
G1537091 NA other upstream 194546 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 503657 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 603708 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 1107941 31492852 ~ 31524883 (-)

Expression


Co-expression Network