G1536987


Basic Information

Item Value
gene id G1536987
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30455676 ~ 30456795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1759171
GGTCGAAGTTTGTTTGTGTAAAAGCAGACACCATGATAGTTTCAGTAACACATTCGCTAGCAAACCATTTAAAATAATCCAATCCCTAACTCAGAAAGAGCAAGGCCGCATACtgagtaatgtgtgtatatttagGTTGTATTTATTTTGGAATGTTTCATAAAGACCAACCCAAAGCCTACGGTCTTTACTGTGTCTTTGTTGTGCCTTACAAATACAAACAATCTGATTTATTCTTCTGCtattaaagtatttttttaattCTAATTTCATGCAATATGATACTATTTAAGAGCATTTATTACTAGTTCCAATTATGAGGTGAGAAATATTTTTTTAAGTACATTCATGTAGTAAGAATGCAAAGATGTTGGTCTGTGTAaccaaacggaagaaaatggactgaaacaagGGAAGACTACTTGGACATATACTGTAAATGTTTGGAGGCTTTTACTACCCAGTTTTCTCTCACATTTCTCACAACTCGTTAGATTGTAACAAACTAGAGACACATCTGAATGTAGTAGAAACGACCATTGAAAATTAAGTGGGAGGGGGAGACATTTATCAAACTGTATTATTTAATATGTACTACACTTATGAAGTATTTCCTCAAAGGCTTTTTTTGTGTAGATTATGTACATAAGAGTTTATCTGAAATAGGATGTCGATTGTGAAGATACATTTAGTCATGTTGCAATGAAATTACTAAACAATGTAAAGAAAATGTTTTTGGATTGTAATGTATGACTTTACCCCCTCACATTTACTTGTGAATAAGTCTTTAATATTTAAAGAGAATTACCTTCAGTATATTTAGTTAtctttgccttgttgacaacacTTTACCCACATGGCATATTCAATAGTGAAACACATTAACTTAGTTTGTAACCAAATGTACACATTGTTGATTTATATTTTACGTTTTTGAACAAAGGAAACTATTTTGATCTTTGTATACCTTTCTACCTACTTTTTATGCTTTTTTTGTCACTGGAgacatatagtgtatatatattcaACAGTGCACTCACTTTTAGTGTATGTCTACTGTTTCTTACTCGAAGATTGAAATGT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1759171 True 1083 lncRNA 0.32 2 30455676 30456795

Neighbor

gene id symbol gene type direction distance location
LOC110496790 lig4 coding downstream 14021 30417843 ~ 30441655 (-)
LOC110495979 LOC106574339 coding downstream 58807 30317376 ~ 30396869 (-)
LOC110495975 LOC106574338 coding downstream 614077 29414177 ~ 29841599 (-)
LOC110495976 NA coding downstream 958204 29496293 ~ 29497472 (-)
LOC110496788 gart coding downstream 1180943 29253527 ~ 29274733 (-)
LOC110495980 irs2 coding upstream 71 30456866 ~ 30476059 (-)
LOC110496791 cars2 coding upstream 32888 30489683 ~ 30497834 (-)
LOC110515180 NA coding upstream 41388 30498183 ~ 30502180 (-)
ndufv1 LOC106588156 coding upstream 149899 30606694 ~ 30612658 (-)
hcn3 LOC106588157 coding upstream 163935 30620730 ~ 30637860 (-)
G1536932 NA non-coding downstream 47506 30389023 ~ 30408170 (-)
G1536930 NA non-coding downstream 67492 30387939 ~ 30388184 (-)
G1536927 NA non-coding downstream 69344 30386037 ~ 30386332 (-)
G1536877 NA non-coding downstream 143016 30307668 ~ 30312660 (-)
G1536708 NA non-coding downstream 168414 30287055 ~ 30287262 (-)
G1537010 NA non-coding upstream 47396 30504191 ~ 30505718 (-)
G1537032 NA non-coding upstream 79571 30536366 ~ 30536579 (-)
G1537058 NA non-coding upstream 106213 30563008 ~ 30568315 (-)
G1537072 NA non-coding upstream 111624 30568419 ~ 30598012 (-)
G1537073 NA non-coding upstream 111844 30568639 ~ 30583563 (-)
G1536703 NA other downstream 170914 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2103058 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2419060 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2541156 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 2657063 27754174 ~ 27798978 (-)
G1537022 NA other upstream 63097 30519892 ~ 30525373 (-)
G1537091 NA other upstream 145921 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 455032 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 555083 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 1059316 31492852 ~ 31524883 (-)

Expression


Co-expression Network