G1537058


Basic Information

Item Value
gene id G1537058
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30563008 ~ 30568315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1759261
aaaaaatcggcaaaaaaatcggaaaataaattcggaaaaaatcggaaaaaaatcggcaaaaaataatcggaaaaaatcggaaaaaatcgcttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattaacagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattatcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactc
>TU1759260
aaaaaatcggcaaaaaaatcggaaaataaattcggaaaaaatcggaaaaaaatcggcaaaaaataatcggaaaaaatcggaaaaaatcgcttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgttcggttgcactctggatacaatgttttaaacatcactgttcaatctacacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagtaataaccacttttccattaaacaaggtctaaaccatttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccaataaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactatgcacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattatcagcaagttgcagcaattgaactacagaaataaccatttttCCAATAAActaggtctaaatcatgtttggttgcactctggatacaatgttttaaacaactgttcaaactagatgatcgggacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaatatccACTTTTCCAATAAACTAGGTCTAAataatgtttggttgcactctggatacaatgttttaaacataactgttcaaactagacactatggacgattttcagcaagttgcatcaattgaactacagaaataaccacttttccaataAACTAGGTCtgaatcatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattttcagcaagttgcagcaattacagaaataaccacttttccattaaacaaggtctaaatcatgtttggctgcactctggatacaatgttttaaacataactgttcaaactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccaataaactaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattatcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccaataaacaaggtctaaatcatgtttggttgcactctggatacgttttaaacataactgttcaaactagacactatggacgattaacagcaagttgcagcaattgaactacagaaataaccacttttccattaataaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattaacagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggctgcactctggatacaatgttttaaacataactgttcaaactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccaataaactaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactagacactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactctggatacaatgttttaaacatcactgttcaaactagacactatggacgattatcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaatcatgtttggttgcactctggatacaatgttttaaacataactgttcaaactatggacgattttcagcaagttgcagcaattgaactacagaaataaccacttttccattaaacaaggtctaaaccatgtttggttgcactc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1759261 False 648 lncRNA 0.34 4 30563008 30568315
TU1759260 True 2847 lncRNA 0.35 3 30563780 30568315

Neighbor

gene id symbol gene type direction distance location
LOC110515180 NA coding downstream 60828 30498183 ~ 30502180 (-)
LOC110496791 cars2 coding downstream 65174 30489683 ~ 30497834 (-)
LOC110495980 irs2 coding downstream 86949 30456866 ~ 30476059 (-)
LOC110496790 lig4 coding downstream 121353 30417843 ~ 30441655 (-)
LOC110495979 LOC106574339 coding downstream 166139 30317376 ~ 30396869 (-)
ndufv1 LOC106588156 coding upstream 38379 30606694 ~ 30612658 (-)
hcn3 LOC106588157 coding upstream 52415 30620730 ~ 30637860 (-)
LOC110496793 LOC106588158 coding upstream 76195 30644510 ~ 30649112 (-)
LOC110496794 LOC106588158 coding upstream 93286 30661601 ~ 30674549 (-)
LOC110495990 hax1 coding upstream 219796 30788111 ~ 30802586 (-)
G1537032 NA non-coding downstream 26429 30536366 ~ 30536579 (-)
G1536962 NA non-coding downstream 56897 30423059 ~ 30506111 (-)
G1537010 NA non-coding downstream 57290 30504191 ~ 30505718 (-)
G1536987 NA non-coding downstream 106213 30455676 ~ 30456795 (-)
G1536932 NA non-coding downstream 154838 30389023 ~ 30408170 (-)
G1537072 NA non-coding upstream 104 30568419 ~ 30598012 (-)
G1537073 NA non-coding upstream 324 30568639 ~ 30583563 (-)
G1537074 NA non-coding upstream 1149 30569464 ~ 30573116 (-)
G1537075 NA non-coding upstream 2311 30570626 ~ 30573398 (-)
G1537076 NA non-coding upstream 5535 30573850 ~ 30579825 (-)
G1537022 NA other downstream 37635 30519892 ~ 30525373 (-)
G1536703 NA other downstream 278246 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2210390 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2526392 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2648488 27839770 ~ 27914607 (-)
G1537091 NA other upstream 34401 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 343512 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 443563 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 947796 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 1117437 31684840 ~ 31692733 (-)

Expression


Co-expression Network