G1537073


Basic Information

Item Value
gene id G1537073
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30568639 ~ 30583563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1759288
aaatcgggaaaaaatcgggaaaaatcgggaaaaatcggaaaaaatcgggtaaaatcggaaaaaaaatcggaaaaaaattgggaaaaaaatcgggaaaaaatcgggaaaaatcgggaaaaaaatcggggaaaaatcgggaaaaaatcgggaaaaatcgggaaaaatcgggaaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaaatcggaaaaaaatcgggaaaaaatcgggaaaaaatcgggaaaaaatcgggaaaaaaatcgggaaaaaatcgggaaaaaatcggaaaaaaatcggaaaaaaatccggaaataaatcgggaaaaaatcggaaaaaatcgggaaaaaatcgggaaaaatcgggaaaaagggaaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaatcggaaaaaatcggaaaaaaattcggaaaaaaattcggaaataaatcgggaaaaaaatcgggaaaaatcgggaaaaatcggaaaaaaaatcggaaaaaatcgagaaaaa
>TU1759289
aaaaaatcgggaaaaaaatcggaaaaaaatcgggaaaaaatcgggaaaaatcgggaaaaatcgggaaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaaatcggaaaaaaatcgggaaaaaatcgggaaaaaatcgggaaaaaatcgggaaaaaaatcgggaaaaaatcgggaaaaaatcggaaaaaaatcggaaaaaaatccggaaataaatcgggaaaaaatcggaaaaaatcgggaaaaaatcgggaaaaatcgggaaaaagggaaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaatcggaaaaaatcggaaaaaaattcggaaaaaaattcggaaataaatcgggaaaaaaatcgggaaaaatcgggaaaaatcggaaaaaaaatcggaaaaaatcgagaaaaa
>TU1759290
aaaaaaaatcggaaaaaaattgggaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaaatcggaaaaaaatcgggaaaaaatcgggaaaaaaatcgggaaaaaatcgggaaaaaatcggaaaaaaatcggaaaaaaatccggaaataaatcgggaaaaaatcggaaaaaatcgggaaaaaatcgggaaaaatcgggaaaaagggaaaaaaaatcggggaaaaatcgggaaaaatcgggaaaaaatcggaaaaaatcggaaaaaaattcggaaaaaaattcggaaataaatcgggaaaaaaatcgggaaaaatcgggaaaaatcggaaaaaaaatcggaaaaaatcgagaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1759288 False 526 lncRNA 0.34 4 30568639 30583563
TU1759289 False 422 lncRNA 0.33 3 30568639 30572198
TU1759290 True 391 lncRNA 0.33 2 30568639 30570535

Neighbor

gene id symbol gene type direction distance location
LOC110515180 NA coding downstream 66459 30498183 ~ 30502180 (-)
LOC110496791 cars2 coding downstream 70805 30489683 ~ 30497834 (-)
LOC110495980 irs2 coding downstream 92580 30456866 ~ 30476059 (-)
LOC110496790 lig4 coding downstream 126984 30417843 ~ 30441655 (-)
LOC110495979 LOC106574339 coding downstream 171770 30317376 ~ 30396869 (-)
ndufv1 LOC106588156 coding upstream 23131 30606694 ~ 30612658 (-)
hcn3 LOC106588157 coding upstream 37167 30620730 ~ 30637860 (-)
LOC110496793 LOC106588158 coding upstream 60947 30644510 ~ 30649112 (-)
LOC110496794 LOC106588158 coding upstream 78038 30661601 ~ 30674549 (-)
LOC110495990 hax1 coding upstream 204548 30788111 ~ 30802586 (-)
G1537058 NA non-coding downstream 324 30563008 ~ 30568315 (-)
G1537032 NA non-coding downstream 32060 30536366 ~ 30536579 (-)
G1536962 NA non-coding downstream 62528 30423059 ~ 30506111 (-)
G1537082 NA non-coding upstream 4685 30588248 ~ 30593123 (-)
G1537140 NA non-coding upstream 56412 30639975 ~ 30640433 (-)
G1537170 NA non-coding upstream 105283 30688846 ~ 30689666 (-)
G1537172 NA non-coding upstream 106731 30690294 ~ 30690881 (-)
G1537194 NA non-coding upstream 120397 30703960 ~ 30704314 (-)
G1537022 NA other downstream 43266 30519892 ~ 30525373 (-)
G1536703 NA other downstream 283877 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2216021 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2532023 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 2654119 27839770 ~ 27914607 (-)
G1537091 NA other upstream 19153 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 328264 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 428315 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 932548 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 1102189 31684840 ~ 31692733 (-)

Expression


Co-expression Network