G1537170


Basic Information

Item Value
gene id G1537170
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30688846 ~ 30689666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1759398
cttaaaaattctagggacaattaggaggcctgcgtcttgtgaccgtagcgtacgtgtaggtatgtacggcaggaccaaatcagagagataggtaggagcaagcccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagcccttgctttgacaggaagccagtgtagagaggctagcactggagtaatatgatcaaattttttggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagccggaaagtagagcattgcagtagtctaacctggaagtgacaaaagcatggatacatttttctgcatcatttttggacagaaagtttctgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaatggtcttgatatgttcttcaaaagagagatcagggtccagagtaacgccgaggtccttcacagttttatttgagacgactgtacaaccattaagattaattgtcagattcaacagaagatctctttgtttcttgggacctagaacaagcatctctgttttgtccgagtttaaaagtagaaagtttgcagccatccacttccttatgtctgaaacacattcttctagcaagggcaattttggggcttcaccatgtttaattgaaatgtacagctgtgtgtcatccgcatagcagtgaaagttaacattatattttcgaatgacatccccaagaggtaaaatatatagtgaaaacaatagtggtcctaaaacggaaccttgaggaacaccgaaatttacagttgatttgt

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1759398 True 821 lncRNA 0.40 1 30688846 30689666

Neighbor

gene id symbol gene type direction distance location
LOC110496794 LOC106588158 coding downstream 14297 30661601 ~ 30674549 (-)
LOC110496793 LOC106588158 coding downstream 39734 30644510 ~ 30649112 (-)
hcn3 LOC106588157 coding downstream 50986 30620730 ~ 30637860 (-)
ndufv1 LOC106588156 coding downstream 76188 30606694 ~ 30612658 (-)
LOC110515180 NA coding downstream 186666 30498183 ~ 30502180 (-)
LOC110495990 hax1 coding upstream 98445 30788111 ~ 30802586 (-)
ubap2l ubap2l coding upstream 113517 30803183 ~ 30896875 (-)
LOC110495992 LOC106588166 coding upstream 222915 30911827 ~ 30955199 (-)
cgnb LOC106588167 coding upstream 269508 30959174 ~ 31005856 (-)
LOC110495994 LOC106588168 coding upstream 319090 31008756 ~ 31014201 (-)
G1537140 NA non-coding downstream 48413 30639975 ~ 30640433 (-)
G1537077 NA non-coding downstream 90669 30576856 ~ 30598177 (-)
G1537082 NA non-coding downstream 95723 30588248 ~ 30593123 (-)
G1537073 NA non-coding downstream 105283 30568639 ~ 30583563 (-)
G1537172 NA non-coding upstream 628 30690294 ~ 30690881 (-)
G1537194 NA non-coding upstream 14294 30703960 ~ 30704314 (-)
G1537631 NA non-coding upstream 31737 30721403 ~ 30721673 (-)
G1537617 NA non-coding upstream 95271 30784937 ~ 30786210 (-)
G1537686 NA non-coding upstream 202102 30891768 ~ 30892048 (-)
G1537091 NA other downstream 85454 30602716 ~ 30603392 (-)
G1537022 NA other downstream 163473 30519892 ~ 30525373 (-)
G1536703 NA other downstream 404084 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2336228 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2652230 27995381 ~ 28092196 (-)
LOC110496004 LOC106588173 other upstream 826445 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 996086 31684840 ~ 31692733 (-)
G1538595 NA other upstream 1024840 31714506 ~ 31715181 (-)

Expression


Co-expression Network