XLOC_003463


Basic Information

Item Value
gene id XLOC_003463
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25059462 ~ 25060098 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008401
GTAAATCCTAGTGAAAAAATGGAAATCAGAACAAAACACAGACTTTGGTAATCCACacaggatcattaatatgcatgttcCCATTAGTGTTTGATTACAGCAATATTTTCTCCATATTTTTAAGTTGATCCAAGCTTTTATTATACTTACTATGCATGTGAGACCAGTGTTATGGAGCTCTAAGGTAATGCAACCAGGTATGAGTATCTCATGTCATCACAGCTTGTCTGTTGAATGCAAATATGAATTAAAGATTTCTTCAGCGCAGCATAAAGAGGCATTAGGTTTGTTTAACTGTCTGTTGTTAGTTTAACATGAATGTTGTGATTTTtacatgtttgtaatgaggcaatgAACATGAAGACTGCTGAATATAAGAGTTTAATGCACGTTTATGCATTGTGTCATCACTTAGTGCTTACTGTGATTTTTCAgagtaaaataatgacaaaaagcttaaaaaaatgtatgtttatacaGCAGTTGATATTAATTCCCTCTGTTTTTATCTTAAAACCACTAAGTTCAACTTTTAATACATCTCTGATAGCCTCTTTTGTCAAGTATAATTAGGCCTATATTTCATCCACAACACAACTCAGGAAAAACTTtcatttcattcactcattccttctag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008401 True 637 lncRNA 0.32 1 25059462 25060098

Neighbor

gene id symbol gene type direction distance location
XLOC_003461 zgc:92107 coding upstream 16248 24994705 ~ 25043214 (+)
XLOC_003460 sulf2a coding upstream 66237 24907469 ~ 24993225 (+)
XLOC_003459 timm17a coding upstream 153198 24900123 ~ 24906264 (+)
XLOC_003458 lmod1b coding upstream 164555 24889170 ~ 24894907 (+)
XLOC_003457 shisa4 coding upstream 170867 24877820 ~ 24888595 (+)
XLOC_003464 ndrg3a coding downstream 4421 25064519 ~ 25155003 (+)
XLOC_003465 trpc4apa coding downstream 97276 25157374 ~ 25180330 (+)
XLOC_003466 NA coding downstream 121759 25181857 ~ 25228195 (+)
XLOC_003467 NA coding downstream 196714 25256812 ~ 25266235 (+)
XLOC_003468 cyldb coding downstream 216650 25276748 ~ 25291709 (+)
XLOC_003369 CR854846.2 misc upstream 8936380 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12347466 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12365199 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12373863 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12379434 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 478348 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 748817 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 880524 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 881811 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 908245 24116083 ~ 24151217 (+)
XLOC_003487 NA non-coding downstream 769272 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1017849 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 1128419 26188517 ~ 26196145 (+)

Expression


Co-expression Network