Gene
RNA
| Item | Value |
|---|---|
| gene id | G1537700 |
| gene name | cssa27h1orf43 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 30905560 ~ 30905854 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein C1orf43 homolog isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1759988 | True | 215 | lncRNA | 0.53 | 2 | 30905560 | 30905854 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ubap2l | ubap2l | coding | downstream | 8685 | 30803183 ~ 30896875 (-) |
| LOC110495990 | hax1 | coding | downstream | 102974 | 30788111 ~ 30802586 (-) |
| LOC110496794 | LOC106588158 | coding | downstream | 231011 | 30661601 ~ 30674549 (-) |
| LOC110496793 | LOC106588158 | coding | downstream | 256448 | 30644510 ~ 30649112 (-) |
| hcn3 | LOC106588157 | coding | downstream | 267700 | 30620730 ~ 30637860 (-) |
| LOC110495992 | LOC106588166 | coding | upstream | 6727 | 30911827 ~ 30955199 (-) |
| cgnb | LOC106588167 | coding | upstream | 53320 | 30959174 ~ 31005856 (-) |
| LOC110495994 | LOC106588168 | coding | upstream | 102902 | 31008756 ~ 31014201 (-) |
| LOC110496925 | LOC106588148 | coding | upstream | 142736 | 31048590 ~ 31051663 (-) |
| LOC110495997 | LOC106570110 | coding | upstream | 153167 | 31059021 ~ 31075756 (-) |
| G1537686 | NA | non-coding | downstream | 13512 | 30891768 ~ 30892048 (-) |
| G1537617 | NA | non-coding | downstream | 119350 | 30784937 ~ 30786210 (-) |
| G1537631 | NA | non-coding | downstream | 183887 | 30721403 ~ 30721673 (-) |
| G1537194 | NA | non-coding | downstream | 201246 | 30703960 ~ 30704314 (-) |
| G1537172 | NA | non-coding | downstream | 214679 | 30690294 ~ 30690881 (-) |
| G1537696 | NA | non-coding | upstream | 3557 | 30909411 ~ 30911711 (-) |
| G1537743 | NA | non-coding | upstream | 116780 | 31022634 ~ 31023078 (-) |
| G1537744 | NA | non-coding | upstream | 120779 | 31026633 ~ 31026865 (-) |
| G1537745 | she | non-coding | upstream | 122519 | 31028373 ~ 31029152 (-) |
| G1537747 | NA | non-coding | upstream | 124940 | 31030794 ~ 31031210 (-) |
| G1537091 | NA | other | downstream | 302168 | 30602716 ~ 30603392 (-) |
| G1537022 | NA | other | downstream | 380187 | 30519892 ~ 30525373 (-) |
| G1536703 | NA | other | downstream | 620798 | 30284372 ~ 30284762 (-) |
| LOC110495963 | LOC106574327 | other | downstream | 2552942 | 28241494 ~ 28368147 (-) |
| LOC110495955 | LOC106574324 | other | downstream | 2868944 | 27995381 ~ 28092196 (-) |
| LOC110496004 | LOC106588173 | other | upstream | 610257 | 31492852 ~ 31524883 (-) |
| LOC100136047 | LOC106605923 | other | upstream | 779898 | 31684840 ~ 31692733 (-) |
| G1538595 | NA | other | upstream | 808652 | 31714506 ~ 31715181 (-) |
