G1537745 (she)


Basic Information

Item Value
gene id G1537745
gene name she
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31028373 ~ 31029152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1760038
TAGACTATAGTACCAGGCAGAGCCTTGACAATCTGTTCCTTCTTCCACTCCCAGGGCAGCTGGTACTCAGCAGGGAGCCGGGGATCTAACTCTGGCCTGGTGACCGGGGTCTTCACGCTCCCTCCGTCACCCTCCACACCTCCCTCATAGGTCATGTCGTAGATCTGGGGAGGCACGGGtcgcccctcctccacctccccctcaaCCCCCTCCAGCAGGACACACATCTTCAGCATGTCCTTGGAACCCCTCCGTC
>TU1760040
acctctgtTTCTCCAGGGGCAGGGTGGGGTCCACCCGGCACACCTCAGCCTCAGGGCTGATACTGGGCGGGCACGAGAGGGAGGGCAAGAAAGTAGGAGAGGACTTCAGGATCTTCTGGCTCCAACTCTTTTGTCgcagatgctgctgctgctgttggggCTGCTGCAGGGGCTGCTGCTGGGGCTGCCGTGTGAGGGTGAGTGCGGGGGGGTCCTCTTTGGTTGGGGTGGGGAGCTCAGGGCAGTTAA

Function

symbol description
she Predicted to enable phosphotyrosine residue binding activity. Is expressed in several structures, including blood vessel; hindbrain; lateral line primordium; post-vent region; and vascular cord. Orthologous to human SHE (Src homology 2 domain containing E).

NR:

description
SH2 domain-containing adapter protein E

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1760038 False 256 lncRNA 0.61 1 31028373 31028628
TU1760040 True 249 lncRNA 0.63 1 31028904 31029152

Neighbor

gene id symbol gene type direction distance location
LOC110495994 LOC106588168 coding downstream 14172 31008756 ~ 31014201 (-)
cgnb LOC106588167 coding downstream 22517 30959174 ~ 31005856 (-)
LOC110495992 LOC106588166 coding downstream 73174 30911827 ~ 30955199 (-)
ubap2l ubap2l coding downstream 131498 30803183 ~ 30896875 (-)
LOC110495990 hax1 coding downstream 225787 30788111 ~ 30802586 (-)
LOC110496925 LOC106588148 coding upstream 19438 31048590 ~ 31051663 (-)
LOC110495997 LOC106570110 coding upstream 29869 31059021 ~ 31075756 (-)
LOC110495999 NA coding upstream 48024 31077176 ~ 31085443 (-)
LOC110495998 LOC106588170 coding upstream 61503 31090655 ~ 31096283 (-)
LOC110496926 NA coding upstream 429685 31458837 ~ 31459087 (-)
G1537744 NA non-coding downstream 1508 31026633 ~ 31026865 (-)
G1537743 NA non-coding downstream 5295 31022634 ~ 31023078 (-)
G1537696 NA non-coding downstream 116662 30909411 ~ 30911711 (-)
G1537700 cssa27h1orf43 non-coding downstream 122519 30905560 ~ 30905854 (-)
G1537686 NA non-coding downstream 136325 30891768 ~ 30892048 (-)
G1537747 NA non-coding upstream 1642 31030794 ~ 31031210 (-)
G1537748 NA non-coding upstream 2298 31031450 ~ 31033722 (-)
G1537751 NA non-coding upstream 7900 31037052 ~ 31037568 (-)
G1537759 NA non-coding upstream 15285 31044437 ~ 31044713 (-)
G1537737 NA non-coding upstream 26908 31056060 ~ 31057140 (-)
G1537091 NA other downstream 424981 30602716 ~ 30603392 (-)
G1537022 NA other downstream 503000 30519892 ~ 30525373 (-)
G1536703 NA other downstream 743611 30284372 ~ 30284762 (-)
LOC110496004 LOC106588173 other upstream 486959 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 656600 31684840 ~ 31692733 (-)
G1538595 NA other upstream 685354 31714506 ~ 31715181 (-)
atp5if1a LOC106588193 other upstream 1028159 32057280 ~ 32058819 (-)
G1539348 NA other upstream 1532574 32561726 ~ 32562120 (-)

Expression


Co-expression Network