G1538082


Basic Information

Item Value
gene id G1538082
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31524477 ~ 31524846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1760403
GAGCGTTCAATCCGACTGTGCCTCCTTGAAGACACATGATACCCCTACCGTTATCATAACAATAACAACAGGTGCCATGAAGGCGAAAATTGCAAAATAGATATTCATAAATCCTGATTCACCATTTCCACAATAAGATTATTGGAACTGGGCGCAGGCGCGTGAGGCTACAACCCATAAAAACGTTAACAATAGAAAAATGAAGCCAAATGGTAGAGAGGCATTTTGTTGAAACGAAATAAATTTAAACGGTCATGAAAATGCACACACCATCCCAAATGCTGCCAGATTATTCGCTTGGTAAACTACTCCCAGcccagacatttctcagccttccTTTATCGAATCGCATCAACCTCGGATATTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1760403 True 370 lncRNA 0.42 1 31524477 31524846

Neighbor

gene id symbol gene type direction distance location
LOC110496003 LOC106588172 coding upstream 80903 31430305 ~ 31443574 (+)
LOC110496002 LOC106588171 coding upstream 165665 31254186 ~ 31358812 (+)
LOC110496001 NA coding upstream 364582 31143125 ~ 31159895 (+)
LOC110496000 LOC106570108 coding upstream 398369 31116914 ~ 31126108 (+)
LOC110495995 she coding upstream 490741 31016526 ~ 31033736 (+)
LOC110496006 LOC106588175 coding downstream 43780 31568375 ~ 31572239 (+)
LOC110496008 LOC106588176 coding downstream 53250 31578096 ~ 31580320 (+)
LOC110496010 LOC106588177 coding downstream 62082 31586928 ~ 31658119 (+)
LOC110496011 LOC106588179 coding downstream 133632 31658478 ~ 31696797 (+)
LOC110496017 LOC106588186 coding downstream 282923 31807769 ~ 31812186 (+)
G1538028 NA non-coding upstream 69092 31454948 ~ 31455385 (+)
G1537999 NA non-coding upstream 101157 31423106 ~ 31423320 (+)
G1537997 NA non-coding upstream 101856 31422422 ~ 31422621 (+)
G1537995 NA non-coding upstream 102823 31421420 ~ 31421654 (+)
G1537992 NA non-coding upstream 107429 31416845 ~ 31417048 (+)
G1538098 NA non-coding downstream 33185 31558031 ~ 31558295 (+)
G1538100 NA non-coding downstream 36363 31561209 ~ 31561556 (+)
G1538106 NA non-coding downstream 49703 31574549 ~ 31574785 (+)
G1538110 NA non-coding downstream 58902 31583748 ~ 31584010 (+)
G1537251 NA other upstream 696431 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1227131 30297131 ~ 30297346 (+)
G1534495 NA other upstream 2711374 28812829 ~ 28813103 (+)
G1534488 LOC106574337 other upstream 2719804 28804028 ~ 28804673 (+)
LOC110495972 NA other upstream 2789249 28732589 ~ 28735229 (+)
G1538208 LOC106588182 other downstream 228864 31753710 ~ 31754191 (+)
G1539641 NA other downstream 1495382 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 1534144 33058990 ~ 33059857 (+)

Expression


Co-expression Network