Gene
RNA
| Item | Value |
|---|---|
| gene id | G1538561 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 31657999 ~ 31658588 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| small conductance calcium-activated potassium channel protein 1-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1760936 | True | 590 | lncRNA | 0.38 | 1 | 31657999 | 31658588 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496009 | LOC106588178 | coding | downstream | 3763 | 31628863 ~ 31654236 (-) |
| LOC110496005 | s10a4 | coding | downstream | 122623 | 31530404 ~ 31535376 (-) |
| LOC110496004 | LOC106588173 | coding | downstream | 133116 | 31492852 ~ 31524883 (-) |
| LOC110496926 | NA | coding | downstream | 198912 | 31458837 ~ 31459087 (-) |
| LOC110495998 | LOC106588170 | coding | downstream | 561716 | 31090655 ~ 31096283 (-) |
| LOC100136047 | LOC106605923 | coding | upstream | 26252 | 31684840 ~ 31692733 (-) |
| ash1l | LOC106588182 | coding | upstream | 63926 | 31722514 ~ 31769106 (-) |
| LOC110496013 | LOC106588183 | coding | upstream | 113024 | 31771612 ~ 31777330 (-) |
| LOC110496014 | LOC106588184 | coding | upstream | 120676 | 31779264 ~ 31784592 (-) |
| LOC110496016 | LOC106588185 | coding | upstream | 138480 | 31797068 ~ 31802818 (-) |
| G1538557 | NA | non-coding | downstream | 9422 | 31648271 ~ 31648577 (-) |
| G1538550 | NA | non-coding | downstream | 14797 | 31643002 ~ 31643202 (-) |
| G1538548 | NA | non-coding | downstream | 18198 | 31639557 ~ 31639801 (-) |
| G1538535 | NA | non-coding | downstream | 36415 | 31620148 ~ 31621584 (-) |
| G1538596 | NA | non-coding | upstream | 56911 | 31715499 ~ 31715738 (-) |
| G1538602 | NA | non-coding | upstream | 82894 | 31741482 ~ 31741850 (-) |
| G1538500 | NA | non-coding | upstream | 111638 | 31770226 ~ 31771332 (-) |
| LOC110495994 | LOC106588168 | other | downstream | 643823 | 31008756 ~ 31014201 (-) |
| LOC110495992 | LOC106588166 | other | downstream | 704691 | 30911827 ~ 30955199 (-) |
| G1537091 | NA | other | downstream | 1054607 | 30602716 ~ 30603392 (-) |
| G1537022 | NA | other | downstream | 1132626 | 30519892 ~ 30525373 (-) |
| G1538595 | NA | other | upstream | 55918 | 31714506 ~ 31715181 (-) |
| atp5if1a | LOC106588193 | other | upstream | 398723 | 32057280 ~ 32058819 (-) |
| G1539348 | NA | other | upstream | 903138 | 32561726 ~ 32562120 (-) |
| G1540148 | NA | other | upstream | 1240990 | 32899578 ~ 32936569 (-) |
