G1538729


Basic Information

Item Value
gene id G1538729
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32021457 ~ 32022763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1761121
CCTGTTCAATtaagaatctccattgaaagtgctttCTAGTCCAGGATTAGACATAATttctgtctgggaaactggccttTAATTATTTGATATCAACTAAAAACAATGGCCAACCACCTCAACCTTTCTCTTTGAATGTCAGCCTGGTATGCTCTGAGCCAAGAGTCTGGTACAGCTCTCTGCAAGAGACAGTCTTCCTTCTGACTGCTGTGCCTCCGGACTACAACTACACTCTTCCGTTGAGCCCATGCTCACCACTATGCTCTTCCATCGGTCCCCCATGCACTTTTGTGTGTATTTTGTTGTCTGGTTTGTCCCTGTCCCTGACACAATTGCTGAACTGCTTGATGGGATCACCCAGGGACTTAAAATCCTTCTCTAGTTGTGTGTCTGCGCTGCAGTAGAGTTTTAGTATCTCTCACTCAGAGCTGGAGGAACTCAACTAATGGCCTGTTTTTTCAAACCTGTCAACGGCAAAGATACAAATAATTAGGTTGGGAAGATGTTTTCTGCACAAGGGTAGTACAAAGGAGGGAAACTACACAACTTAAAACATGCACTGTCTCTGATTGCAAGTTGATCTGAACGGTCTTAGAAAAGTGGCATTATCATGACAATGTAAACTACATTATTTACAATACAGCCAACCATACtaataataaatacataacaaAAATCAATGCAAGGCTATTTCAAGTGTGACCCGCATTATCATTTTTTGGCACATACCTGTAAATAGTCAATTTGTTGTAACCAAAGAAGTCAGGTAATCCACATTCCTCAGTGGCAAAACAGTATTGCTTTGAGGTACTCCGGTTGATGGACTTCTGCGCATTTGTCCGGTAAAGTGCCTTGTCTCCTTGCTTCTCAGGCAAATTAGCTGAAGACATAAGCACTAATCTCATTACAGGGATGCAAACAAACTAGTGTAGGAAAGAAACAAGTATCATGTCATGTAGTTTTCAATGACATGGAATGACCCATTCCCATTATTTGAATTTGGTTAGTTTAATGAACTGTCAGTGTAGTTATAGGCCTGTGTTGCCAGGTGATATTTCTGACCATAAGTAAAGagtgagagggggcagagagaagcCACAGTCTGGAGGAAGACCGCATTGAGGCATGAATCACGTTTGTTTTCAATGTCAGCAAGGGGATATCCACTTTTCTTTAGCATAGCTGCCATTTGAAGCCGACAGTGACTCATTGGTGCAACCTTGAGCCATCAGCCATCCACTACTTTGTACCCAAATAGCACAAAAGTCACTCAATCCCCACCACCCATGATCATGTCATTTTGACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1761121 True 1307 lncRNA 0.42 1 32021457 32022763

Neighbor

gene id symbol gene type direction distance location
LOC110496016 LOC106588185 coding downstream 218639 31797068 ~ 31802818 (-)
LOC110496014 LOC106588184 coding downstream 236865 31779264 ~ 31784592 (-)
LOC110496013 LOC106588183 coding downstream 244127 31771612 ~ 31777330 (-)
ash1l LOC106588182 coding downstream 252351 31722514 ~ 31769106 (-)
LOC100136047 LOC106605923 coding downstream 328724 31684840 ~ 31692733 (-)
dnjc8 dnjc8 coding upstream 3794 32026557 ~ 32032535 (-)
LOC110496024 LOC106588192 coding upstream 14392 32037155 ~ 32056879 (-)
atp5if1a LOC106588193 coding upstream 34517 32057280 ~ 32058819 (-)
LOC110496026 LOC106588194 coding upstream 64464 32087227 ~ 32114802 (-)
LOC118941048 NA coding upstream 149785 32172548 ~ 32173426 (-)
G1538746 NA non-coding downstream 38527 31982540 ~ 31982930 (-)
G1538745 NA non-coding downstream 40316 31980536 ~ 31981141 (-)
G1538744 NA non-coding downstream 41661 31979531 ~ 31979796 (-)
G1538735 NA non-coding downstream 56863 31964005 ~ 31964594 (-)
G1538691 NA non-coding downstream 103525 31906589 ~ 31917932 (-)
G1538783 NA non-coding upstream 57090 32079853 ~ 32080084 (-)
G1538803 NA non-coding upstream 103846 32126609 ~ 32126919 (-)
G1538810 NA non-coding upstream 107991 32130754 ~ 32131032 (-)
G1538822 NA non-coding upstream 116103 32138866 ~ 32139078 (-)
G1538824 NA non-coding upstream 116723 32139486 ~ 32139822 (-)
G1538595 NA other downstream 306276 31714506 ~ 31715181 (-)
LOC110496004 LOC106588173 other downstream 498001 31492852 ~ 31524883 (-)
LOC110495994 LOC106588168 other downstream 1007281 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 1068149 30911827 ~ 30955199 (-)
G1539348 NA other upstream 538963 32561726 ~ 32562120 (-)
G1540148 NA other upstream 876815 32899578 ~ 32936569 (-)
G1540473 LOC106581475 other upstream 1368576 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 1579711 33602474 ~ 33610948 (-)

Expression


Co-expression Network