G1538336


Basic Information

Item Value
gene id G1538336
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32025784 ~ 32079330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1760692
GTCTGTCTGCCAAATGGAATTGATTGTCTTTAATGTTGCATGAGCATAAACTGGCAAATCTCTTTGGAAATGTATAACTTGATCACTCAGATTACCTATTTAAGAATATATTGGACATAGTGTAACAATTAGAGTTAAACTGACAGACTAGGCCCTGGCTTTGTGGTACTGTAGATTGAGTGCAACACTGCTGCAATTAAACACTTGATATGAAAACAGAATGGATGCACAATGCTACGGAAGAATACTGTTCTTATGACAAAGATGATGGCTAGAGGGTCACGAGCAATGGTAAATTGGGGTAACTAATTCCAATGTATTGAAGAGAGGGGGCATCAATATAGGAATAGTAGTGGACTTTCTGGCTctgttccaaatgacaccctatttagTTTGTCTATTGCCCAGGATCCAtatggttctggtcaaaagtagtgctctacatatggaataggatgCCTTCTCTGTGTAGTGGAATCGACATTCTGATGGAGGGATACTTGCGGGACGTTGTCGCTACCTCGCTCGCCAACCAAAGTGCATGAATAGAGGAGTAAACTGAAGGGAGAATATTCATGCACTCGCAGAAATAATAAAGAAGTATTTCTGAAATCTACTTCCATTGTCCTCCAAGAGCGGCTGGACCCCTTGTTTCACAGTAAGAGAAGAATTCCTTCATATGTTATAGGATCCTGTACCTATTTCCGAACACATACCAGGCAGTCGTTACCTGAGGATGTAATTGTTCTAACCTGAACCTAGACTGCGTTGTTACAAACAAGCTTTTATttaaaggtatataaaaaaatacaggCAAACTAAGGTGGTTACAGAAATGGAAGATTTCCTGTCATCTTTCCTACTTTAATTGAGGCCAGTCAGTGATGCTCTCATGGAGGTTGCACGTCACAATTATATACATTAAAAAACAAGCACAAAAGTACATTTCTCAGGACGGTGGATGCACTGTCAAGAGTAAGTAAGAATAATGGGTCAAGTCTCGATTCTCCACCCTTCTTCCGAAGTGTGCACTTCCAGACTTCCTCGCATGGATTTTTACAATGGTGGAAACTGTCTTCGGCCAATGCTTTTAAACATGATGTGGAGtgtacaagtgcacactttgggtaGTATCATTAACCATCACACCTCAACAGACATCACTCTCTCTGCTCCATCTTGACTTTAGGAGGCTTCAAGAACGACCGGGGTTTCTTCTCTTTTTTAGCTTTGCCTTTGCCTGCCTGGAAACTCCTCCAACTATCCACTCGGCCATCCCTTGTTTCCTTGTGACAAAAAATGTAAGGTATAGTCAGCGATGCATGAAGAAAACAGCAATATCGGGCCGACTTCTACAACAACTGACTTTACCCTGCTGCTGGTGGTGGTAACGCCATATCCCTGAATCTCAGTTTAAACAACCGAAGAGCCAGCAGCTACTtttcttaactaggcaagtcagttaagaacaaattcttattttacaatgatggcctaccccggccaaaacctcccctaacccggacgacactaggtcaattgtgcgccgccctatgggactcccgatcacggccggttatgatacagcccgtgatcaaaccagggtctgatgcagtgccttagaccactgcgccacaggTACTCCGTCCCTCCTCATCCCAGCTTCTTTTGGGAGATGTTAATCGTTTACTGCTCAATGTCATTTTCACTCAAATGTAATTACAACCTTTTTTCAACATACCTCAAAGTTCTTCTGCCATTCCCTCTCTCGCTTAGCTTTCTCTGCCGTCTCAATCTCTTCCTCTCTTGCCCTTTTCCTGAGGAGAAAAATGACACAAAACATTGAATGGTATTCCCTCCTTATGGCCACCAAAAGAAGACCAAAGACATGAGGGCCATGTATTCCTATAATTCAAGTATTAAGCAATTACACTGAGCGTTCTGTGCTGATGTGTTCTGTATTTCACCaacgatatacagtggggcaaaaaaaatatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaagaaaaaaaatccagaaaatcacattgtagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1760692 True 2129 lncRNA 0.42 2 32025784 32079330

Neighbor

gene id symbol gene type direction distance location
LOC110496023 LOC106588191 coding upstream 4945 32008229 ~ 32020839 (+)
LOC110496022 LOC106588190 coding upstream 17833 31985755 ~ 32007951 (+)
LOC110496020 LOC106588189 coding upstream 73243 31924273 ~ 31952541 (+)
LOC110496019 LOC106588188 coding upstream 106361 31881946 ~ 31919423 (+)
LOC110496018 LOC106588187 coding upstream 167767 31813905 ~ 31858017 (+)
LOC110496027 LOC106588195 coding downstream 262379 32341709 ~ 32351799 (+)
LOC110496028 NA coding downstream 272725 32352055 ~ 32361876 (+)
LOC118941135 NA coding downstream 494626 32573956 ~ 32659643 (+)
LOC110496032 LOC106588200 coding downstream 641019 32720349 ~ 32964969 (+)
LOC110496033 LOC106588201 coding downstream 915204 32994534 ~ 33050381 (+)
G1538342 NA non-coding upstream 33716 31991022 ~ 31992068 (+)
G1538326 NA non-coding upstream 42750 31982609 ~ 31983034 (+)
G1538330 NA non-coding upstream 46321 31979230 ~ 31979463 (+)
G1538323 NA non-coding upstream 55028 31970502 ~ 31970756 (+)
G1538317 NA non-coding upstream 59763 31963832 ~ 31966021 (+)
G1538382 NA non-coding downstream 919 32080249 ~ 32080726 (+)
G1538974 NA non-coding downstream 170857 32250187 ~ 32250417 (+)
G1539280 NA non-coding downstream 426679 32506009 ~ 32506227 (+)
G1539310 NA non-coding downstream 451760 32531090 ~ 32531297 (+)
G1539311 NA non-coding downstream 453491 32532821 ~ 32533074 (+)
G1538208 LOC106588182 other upstream 271593 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 445464 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 453545 31568375 ~ 31572239 (+)
G1537251 NA other upstream 1197738 30822508 ~ 30828046 (+)
G1536720 NA other upstream 1728438 30297131 ~ 30297346 (+)
G1539641 NA other downstream 940898 33020228 ~ 33020544 (+)
G1539671 LOC106582599 other downstream 979660 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 1376230 33455560 ~ 33458964 (+)
G1540551 NA other downstream 1410007 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 1455946 33535229 ~ 33537569 (+)

Expression


Co-expression Network