G1540190


Basic Information

Item Value
gene id G1540190
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32959317 ~ 32964976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1762647
ccacatttttttattgaaagcatcagagaaaaaaacaactcATTAAAACCGAAGTTTAATCCTAACATCCACAGATGTACAGATATTTATCAAGGATCGTACACACTGAGTGGCGTGCATAAGGCATGACCACATCCTCCTCTGCGCTGACCCAAAGcaaaaatagaaaaacaacaaagaacaaaactaaacaaaaaaatatctaaGAACCGCTTTGCTGTCCTAATAAATattcctcttttttttttattgtataatAATCCTGACGCTTAATGAAAGTTCTGGAGGTTTCTTCAGCAAATTTGGTTGGCCATTTCTAATGATAGTTACTCAATAGTGTTTGACGTCTCTGGGAGCCATTTCATTCTGAGGAAGGTGTGTGTTAGGTTAGCCAGTTGGCTGAGCTCCTGGGGATGTGCGGCCAATCGATGCCTCCCGTCAAAGGTGAACCGGAGCATCAATTAAAAAGCGTGGgacacattttttttgggggggagcaaTTTCCCCACTGAATTACGTGGTGGTAAGAGCTGAAAGAGTGTTGAGTTATATCGAGCCCGGCGCTCTCCTGTCACACTGCGGGAGTCCCAACTCTGAGGCACTGTCTGTCATGATACAGTCCAGTTGTGCATTGtatggagaatagggtgccaataTAGGACACAGTATCCCCTATATAGACATAGGGTCCATTTTGGACACAGGGCCAGTCTTCTCTAAACCACTGTCTAGTCACAACGTGGGAAATCACAAGAAGCCTATGACAATGGGGTATGACATTGATCAACTTGGAATGCCATTGTGGTGAATACGCTCCTAAGGACTTGATAGAAATATGGTAGCTAGATATGACCGACTGGCTTGCTATCTGGACGGAGGCAGTGAGACAGACACAACATGGGACGGATTGGAGGAGTGGACGGCGTTAAAAGGGCAGGGAACTGAAGCAGCTCTGTGCCCCAGCCtggatagatacagtagactgaGACGGAACACGGCTGCTCTGGAGATACCAAAGACATCGGGGCGAATCCTAACTTCCACTAAAGTCAATGTTTAAGTTAGTgaatgcattgatgtcaatgggagagaACGTGAACATTTTACTCACGTGGAAGTTGGCCCCATAGAGCCTAAGTAACTGAGACTATGATGGTAAGCAATGAAGAGCAGAGTGATAACCGTACTCTGATGAAGAGATAATGAGAAGACTAACACACTGActgaaacactgtgtgtgtgtgtgtgtgtaatactcAGAAATGTCTGGCAatagtgagtatgtgtgtgtgtcagcgaaTGTAGTAGAGCCAATGACCCTCTCTGGCTGGTTTGTTCTGACACATAGGCTAGCGAGCTAGATCTTTAACTGCAGCTCCCTAAAACGCAGTGAGAATCACTGTACATGTTTAGCAGGCATCTTGCCCGGCCATTGTGCTACAACTAGCCTAGAATAAGAGAGGAGTTCAGTCAGTCTTGATACTGCTATTTCAACCACGTAATGACCTCATCGATATCGCTCTTACCCCATTGAGGGAAACCTCTCCTCACTTCAATGTTTTCTCTTTCTTGAATCTCTGGTAGCAATTTGGAGCGTATACAGTTCTGTTGTGTGCTTTTTTTTGGTCATTTCTATTTGTCACCTAATTTTCCTTGTATGTCATTGCTATTGTATCTTAGACGGTGACAATATGTGTAGCGCGTTGACCTTTGTGATCAAAGGTGAGTGCGGTCAGATTCCTACGGTTAATCAATGGTTTCTTCTTTAGTCTGTCTCTTAAAGTAGCAGCTGTAAGAGTGGTCTATGATGTAGAGCACATCGTTTCAGGTACAGTTTGAACACCATGGAGGTTGAGGAGCAAACGTCGACCCCGACCAACGGCTCGCCTGCTCACGAAAAAACCACGCAGCAAAAATCAATGTTATTACCTGGAGAGACGTGCAGAAATGTACACAGGTTGTTGTCACTGGAGTGAAAATGGCACAGACGTTTTGGGTTTGTTTGTCTGTTGGAATTGTAAAGTGGGTGACTTTGCGCATATATCCTGTGATCTCAAAGTTTTCTGTACTCGGAAAGTAAAAGCAGAAGATGAGGGGAAGTGACAGGGTGAGtgaaaagaggaaagagagaggtgtttGGGGACAGTGGGCAGCTGAGTAGCTCTGGTGTTGGTAGATTGGTGCAGTAAATTTGATCATTGACTTGTCATTGGGATGGAAGACATGTGGGTCGAATGTTTTACGGGACAACAGATTGCCGAATGGTTATATTTTCTCCGATTGCATTGCCTGTGTTACGGTGGTTATGATGGCAGCTCACGATGTAGACCACGTAGTTCACGATGGGCCCGTTTTCTATTGGTTGTGAAAAGCACAACCCAATGGGATGAGCCACTGTAGTAAATGAATGTTGATCGACAATAGCCAGTGCGtcacagaccaacagacacaaagCAGGCACATGCCCAAGACAGCTTTCACTGTAGCACCTTAGAGTAGGTTGTACATTTGTACTAGTTTAGCACAACTCCTTCAAAAATGTACGGTTCCCTTATATAAGATAGCTTTTCCGTGTGCTTTTTTTCTATCCTGTAGATATTGGAATCATTTGGAAGCTTCGTTAAAGGCACTCGATGAACAATTACATTGTTACAGACATTTCTGTGTGCGATGTCATAGCTGACCCATGATGTCACTGCCATCTTTCCCGGAACGCAATGCACAGCCTGCCTTTGAGTCACATGAACTGCTGGATCTCAAAACGTGCAATTGTTAACGGAAAAAAAGAACACCAAAAATCCCTCTTTTTCTCTAAAAAATAGGCTTTGGGGGACACTGGAGCGGATCCCAATGCCCTGAGGGGAGACAAATTGGGCCCTGTCAAGGCTCATTGAGAATGTGACTAAAATTGGTTTTGTGGTTCAGCTCCTGCACTATCCAATAAAGAGGGAAAACCTCACcgaggaagagtgagagaagagagagagtgaagcctGGTCAGATTAGTGGTGCCTTTTTATGGCTCTAGCACCACAgtgagcaggcaggcagggaccCAGAGGTGTTGTCcggaatggaaccctattcttAACATGGAGCCCTATtttatgaccagagccctatttatttaattttatttaacttttatttaactagataggtcagttaagaacaaattcttacttacaatgacggcctacaccggacgacgctgggacaattgtgtgccgccctatgggactcccaatcatggccggatgtgatgtaGCCTGGATTCGacccagggactgtagtgatgccttttgcactgagatgcagtgcctggtcaaatgtagtgcactatatagggaataaggtccCATTTCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACGCAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCATTCACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGAGGATAGAGACACACAGCACTCCAGACACAGGGTACTGTAATggagatagagacacacagcgCTCCAGTCACAGGGTACTGTAATGAGGATAGAGACACACAGCACTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACGCAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACGCAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACGCAGGGTACTGTAATGGGGATAGAGACACACAGCACTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACGCAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCACTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACGCAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTAATGGGGATAGAGACACACAGCGCTCCAGACACAGGGTACTGTGTACAATGGATAGGGGTTTGATGAAAGGCTGAAAGGAGTGGGGCAGAGATATTTACAGGCTACTGAGTCTAGAGGCGGAGAAGACAGGCTTTTTAGGCTTGGCTGAAAGGTTACTGTCAACATTATTGTAGTGCACTATTCTGGAAAATAACCCCTTAGGTCTGAGTACAGTAGTGTTTATCCAACCCATAAAAATGGATATCCAAGAGAGATAATGTTTGCTAAAGCAGATAACACTACTATGCTTCCATGTGTTCGTTTTGTTTGTTTGGAGTTCAGAGACATATTAAACACCGAAGCACACCAGGTGGTTAACGTGTCAATGCTAGTCTTGAATTAAGTCCCTGTCCTCCTAAGTACATCGTGCCTGGGATAGCAGGACATGTTTGACTTCCATGCAGACAAACGAGAGAGTGCCGGAGAGTTTTGCTGTGTGTTGTCTGGATGACTGGAGAGGGGGGGAAAACGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAACGCGGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAATGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAATGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAACGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAACGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAATGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAATGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAATGCAGGGTAACGTTGATGAGACTCCCGGGGAGGGGAGAAAATGTATCCGTTTTGTTCAGTTGTCATTGATTCAATGAGATGAAGCGACAGCGTCGAGGCAGAGATCAGGGGGCCAACAAAGCCAGAAGCGAAGCATTAATGACCGAGGAGCGAGCTGCAACATTACCCAATATTTCCTATAGTGTTTACTGTTGACTGGTGGAATGCCCCCATAGTTGGCGAAAGAGTGGAACACGACAGATGAGAGGCGGAAAGACAATTTAAGTGGCAGAGAGGGACATTAGGTCGAACTGCCACTAGTTGCATCACATGTTCAAATACTGTTTGACGTCAGTGTGATAGTTTCGACAACCGTGGAAGGTAGCTTTAGCCAAAACGTGTAATTGTAATGAAAGGAAAAGTACGGACTGGTCCGGCCATCAAGGTCAAATTAAAAACAACAatgacaacagcaacaacaacaatatcaacaatAACATCAACAGCATCAACAACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1762647 True 5660 lncRNA 0.47 1 32959317 32964976

Neighbor

gene id symbol gene type direction distance location
eomesa eomesa coding downstream 504934 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 541494 32365592 ~ 32417823 (-)
LOC118941133 NA coding downstream 611636 32336621 ~ 32347681 (-)
LOC118941048 NA coding downstream 785891 32172548 ~ 32173426 (-)
LOC110496026 LOC106588194 coding downstream 844515 32087227 ~ 32114802 (-)
LOC110496796 osbpl10 coding upstream 207450 33172426 ~ 33309331 (-)
LOC110496036 LOC106588206 coding upstream 401711 33366687 ~ 33379508 (-)
cdcp1b cdcp1 coding upstream 427437 33392413 ~ 33414958 (-)
LOC110496042 ddah2 coding upstream 561165 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 595866 33560842 ~ 33573866 (-)
G1540167 NA non-coding downstream 33724 32924440 ~ 32925593 (-)
G1539346 NA non-coding downstream 397875 32561097 ~ 32561442 (-)
G1539318 NA non-coding downstream 422457 32536579 ~ 32536860 (-)
G1539307 NA non-coding downstream 430118 32528995 ~ 32529199 (-)
G1539295 NA non-coding downstream 434635 32518678 ~ 32524682 (-)
G1540193 NA non-coding upstream 725 32965701 ~ 32966382 (-)
G1540194 NA non-coding upstream 2274 32967250 ~ 32967450 (-)
G1540195 NA non-coding upstream 4141 32969117 ~ 32969378 (-)
G1540197 NA non-coding upstream 25889 32990865 ~ 32992424 (-)
G1540210 NA non-coding upstream 46290 33011266 ~ 33011472 (-)
G1540148 NA other downstream 22748 32899578 ~ 32936569 (-)
G1539348 NA other downstream 397197 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 900532 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1244136 31714506 ~ 31715181 (-)
LOC100136047 LOC106605923 other downstream 1266646 31684840 ~ 31692733 (-)
G1540473 LOC106581475 other upstream 426363 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 637498 33602474 ~ 33610948 (-)
LOC110496049 LOC106588217 other upstream 692665 33657641 ~ 33674304 (-)
G1541318 NA other upstream 1196951 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1770398 34735374 ~ 34794929 (-)

Expression


Co-expression Network