G1539643


Basic Information

Item Value
gene id G1539643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33021240 ~ 33021461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1762074
AGCAGATGGACGGACAGACCCAGTAGCTAGAGACTCCACTATGCactcctccatggccttggtctcCGGCACCTGGGAGGAGAtcaatggcacaatcataagGATGATGCCGGGGAAGAGAAGTAGCCTGTGCTTTGCTGAAAACCTCCAGGAGGTTGTGGTACTCTGTGGGGAAGGTAGGGAAATCTGAGATTTGACTTAAGCCCAAAGAAGGCTGTCTCG

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110367794

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1762074 True 222 lncRNA 0.53 1 33021240 33021461

Neighbor

gene id symbol gene type direction distance location
LOC110496032 LOC106588200 coding upstream 62182 32720349 ~ 32964969 (+)
LOC118941135 NA coding upstream 361681 32573956 ~ 32659643 (+)
LOC110496028 NA coding upstream 659364 32352055 ~ 32361876 (+)
LOC110496027 LOC106588195 coding upstream 669441 32341709 ~ 32351799 (+)
LOC118941132 NA coding upstream 956428 32058052 ~ 32064812 (+)
LOC110496034 LOC106588202 coding downstream 65140 33086601 ~ 33172114 (+)
LOC110496035 tmem42 coding downstream 331334 33352795 ~ 33356691 (+)
exosc7 exosc7 coding downstream 359129 33380590 ~ 33389754 (+)
nrm nrm coding downstream 399373 33420834 ~ 33426552 (+)
LOC110496040 LOC106588209 coding downstream 411905 33433366 ~ 33450101 (+)
G1539642 NA non-coding upstream 289 33020675 ~ 33020951 (+)
G1539640 NA non-coding upstream 2091 33018926 ~ 33019149 (+)
G1539634 NA non-coding upstream 14263 33006777 ~ 33006977 (+)
G1539622 NA non-coding upstream 50430 32970460 ~ 32970810 (+)
G1539651 NA non-coding downstream 6924 33028385 ~ 33028676 (+)
G1539625 NA non-coding downstream 28973 33050434 ~ 33051933 (+)
G1539669 NA non-coding downstream 32965 33054426 ~ 33054847 (+)
G1539674 NA non-coding downstream 45320 33066781 ~ 33067011 (+)
G1539677 NA non-coding downstream 48466 33069927 ~ 33070147 (+)
G1539641 NA other upstream 696 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1267049 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1440920 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 1449001 31568375 ~ 31572239 (+)
G1537251 NA other upstream 2193194 30822508 ~ 30828046 (+)
G1539671 LOC106582599 other downstream 37529 33058990 ~ 33059857 (+)
LOC110496797 LOC106570068 other downstream 434099 33455560 ~ 33458964 (+)
G1540551 NA other downstream 467876 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 513815 33535229 ~ 33537569 (+)
G1540996 NA other downstream 1057257 34078718 ~ 34079074 (+)

Expression


Co-expression Network