G1540456 (tmem42)


Basic Information

Item Value
gene id G1540456
gene name tmem42
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33352824 ~ 33356662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1762925
CTTTTAATAATGCATTTTTGTTTATAATACATTGCCTTTCCTTATCCCCCTAGTAGGGCCCCAGTGCTGCACTAATCTGGAGCACACATCTTAACAGGTCAGTCATATGCACCTCCCAAACTAATATCTACAGTTTATAACATGATAtccatatctacagtataatggttACAACAAACATGTCCCAGTCAGGTGCTGGCTATAAATCAAACATTTCATGAAACCACTGCACTAATGCATTGATTTCTCTTGCCCTTAGTAACAGTGGCTTCACAGGTAAATGTTTATCCTCAGTTTAGACTGAAGAACACAGGAGAAATGTCAGCACCAATGTCTCCCATCCTGATTCAATAGCATAGATAGTCACATTGCAAGGGGAGTAGattacattacatacaaaacCTGCAGTCTGTAATGTACTGCAACTGGATGGAGAACCGATTTCATAGTGTGCATTCCTCTGCATTTATACAGACATATCATTGTCTAATAGATACAGTCAGAATACAGGTAGCTACCGTTGGTTGTTGCATGCATATGATacgtataaaaaaaaaacagcaaagtGTGATCGTATAGTAAAGTTGTCAAGTCAAACTCCAGTCTATGGTAACGTTGTCAGTATTACGCAAAAAGCCCATTTCCACAATAGCACATCACAGTGTTAAGGAATATCAGGGAAGTACACCGTTGGAGGACAAGCATGCTAGTAATAAACACTACTTTCAGTAGTTGGGTTAGAAACCCCACAGCAACATTTGACCTTTTGGGAGTCTTGGAAGATGCAGAGGGAGGGACTGTGCTACCGGATGCCTCTCTTACCCCAAGGATAACCTCAAACTGATTTTAATTGCATTGGAAAACTAGGATAGACATTGTTGATGAGACAGGCCTACAGCTGGAAGACAAACAGCTGGTGACACTCAATTAAAAGGCCAGACATTGGAGTAACTGTTGTTTAGACACCCCATTAGGTCAGCATTAAATGAGTCTCTTCTGCCAAAGGAAATAAGGGATAGTTCACTCCAAAATTTTAGTTGAGGTCAGATGTGGGCTAATGTCAAGAGGTCCAGACTGTCTGCTGTGTAGATCCAGCTCTGTGCCTCATCTCCAAATGAATTGGAAAGACAGGCACCCTCTAAAGAAGATGAAATTAGACTGTGCCTATCCTTTCCATTCATTGGAGTTTGTCTCATCTCGACATTAGGCCACTTTTGAGGTTTGAATATGTCTGACAAACTTAGATTTTTGAGTGAACTAGACAGTATCACTTTACAGGCAGTTGAGGTCACTACGATTTATTTTGGGCCACTTAGCAGTTTGACTTCACAATGCATTGACAGAGCCACTGCTGTGGTTAGTGGGTAAAAGGCAGGATCAACATATTTGGGTACTTTGGTTTGACTTAATTGGGTTTAGACCTTGTGAGGAACTTTCTATTAGACATTTGCTATAAAGGCAGGCAAGGCCAAACCTCCTCAGAATTCACAAAACATGTCAAAACTCTAAGGGTCAAGTCCTCAAGatatgaggctatatacatgatTCCATTCACACATCACCTTGAACATGCAATAATGCAATGTTGGTGTGGAAGTTTACAGTGAGTGTCATCTTAGGATATGTGAGCAAAACAGCTTTTGTGTTCTCAAGTATTGATGTCATGCACACATTGCTGATGATGTCAAAGtgtttaaaacaaaacaaaaatcactATATATTCCTTACATGGTATGTTTTGACAGTGCTTTACCTTCCAAAGTTGCCATTCACCCAAGAAATGCTATTGTTTGTCACAGATAGTAGGCTATACGTTGCATTACTGGTTTCTTTCTATATCAGTTAATTAGTTGTGCCTTCCGACAGGTTGTCATTCATCCTTCCTGGCTCGGTCGTTGGGGGCTGCCCTCTGAAGTACCAGGAGGCCAGAGAACGTGAGGGAGATTCCCACCCACCACAATGCAATCTGGGCCTCCCCGAAGATAAGCTgccccaaaaaggcctgtggcaAAATACAGGGAAACATGTACTTACGGAAGATATGAAGTTGGAAGCGGTGGTGGTCACAGTGGTtcgggtggaggaggaagagtacCTGAGAGCCTTAGCGAGGAATGTCCACATCACAGCATTACAAGTGAAGAGCAGCCCCCCACAAAGCAGCCTCAGGGGGATGTGTAgctgaaacaaacacacaaacacaatagaTACCTTTCGGTGTTTGCAAACATTGCTCCACGACGTGCACAAGTTGGTGGGAGAACAAGGGGGAACAAGGGTAAAAAAAAGCCTCTATTTACATGTTGCTTATAAGTGCATTGCGcactacttttggattataatcATATTTTAAGGCTAGTATGtatgtcctgcttaatataatgtttgtgtcatcatcgcaaatcaactgcattgtacttttttttaaaacagtcTATTTCAATGAGCCTTAGAATTCTAGCTAACAACGGCTGAatccaaaatagttattttgcaAAGATAACCAAATATAATCTTTGTGACCATTCAAGCAAGAGTCTAAACATCATTGTAAGCATAGGAGAACCCCAAAAAGTGACGTTGTTTATAAGTAATAAAAACGTAAATCTAGGCTATGTTGAACGGGCATAGATGGTGATGGCTTTTTACTGCTGCCAATAGTAGCACGCATTTGTGCGTGACGTCAGTGTGTCGTGTACTGGAATGTGGTCTATATGAATGAAAACAATGTTATGTGGCAATTGAGTCACATCAAATAGTTGAGCTCCATTTCAGGGATTTGGAGCCTATTTTAGTTATGTGTCTTGATATGTAAATGTATGTAAAATAAATATCTGacggctttataaataaataatatagatGATAACTCAAACGTAAAATCATAACACCACATTATGAAGGTCGTTTCAAGCAGCCCAATTACAATTTGGTATTGACATTGAATGGACAATTGCCCATATGTTAAACTAGGATCACATTCGGCCACTAGAATAAAATGATACTCAACATAAGCAAATATCTTGCTTTAACACAAAAATAAACGATGTAATACTGCACTACTGTAGGTCGCACGAGCTGCAATGTCGTTCAAGCACGCGGGTACGACAGAAGCTTGATACACAGCATCGCCTGTCCAGCTGAGCGAACCTCCGATGATGCTGCCGATGGTGCTGGTGCTGATGCTGAGCGCACGAGCTGGAATCCGGAGCCTTAAACTCATCACTGGAAAACCCCAATTTCCCTTCTCGCGGACGTATTGCTATGCTAACACATTGACATTTACATTATTCAAAGCCACCCGAATCCCATCGCGTTAATAATTCAGGCACTTAAACGGGGGCGATTCCTCACCCAGTCACACGCGGTAGTTTCATCCGGTTGTCTAAATTTCCGCTGCTCTCCCCATGTTCGTAGCCCCGTTTCACATACACCTTTAAGGTAATCGGCTCCAAGTGACAGCTTTGCAGATGAAGATGCGACAGCCCCGAGAAACCCCGCCAGGAGCGCATAGAAAACGCCGGGGAACATGTTGACAACCAAGGCACATATTTTTCTAATCCATCACATTCCTACGGCGGTATTGAGTTGAATGTGTGAGTAAAATCTAATCTACAGGCTACTTCCTAACAATAACCGCCCGGAGATAGCCACACCAATCAAAATACTTGCTCAGCGGGTAGGTGCAGAAAGTGGTTCGAACT

Function

symbol description
tmem42 Predicted to be integral component of membrane.

NR:

description
transmembrane protein 42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1762925 True 3704 lncRNA 0.42 2 33352824 33356662

Neighbor

gene id symbol gene type direction distance location
LOC110496796 osbpl10 coding downstream 43493 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 898441 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 935001 32365592 ~ 32417823 (-)
LOC118941133 NA coding downstream 1005143 32336621 ~ 32347681 (-)
LOC118941048 NA coding downstream 1179398 32172548 ~ 32173426 (-)
LOC110496036 LOC106588206 coding upstream 10025 33366687 ~ 33379508 (-)
cdcp1b cdcp1 coding upstream 35751 33392413 ~ 33414958 (-)
LOC110496042 ddah2 coding upstream 169479 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 204180 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding upstream 215352 33572014 ~ 33573707 (-)
G1540320 NA non-coding downstream 180731 33170529 ~ 33172093 (-)
G1540316 NA non-coding downstream 197731 33154844 ~ 33155093 (-)
G1540254 NA non-coding downstream 270174 33082428 ~ 33082650 (-)
G1540239 NA non-coding downstream 289178 33063416 ~ 33063646 (-)
G1540238 LOC106604990 non-coding downstream 293195 33059244 ~ 33059629 (-)
G1540466 exosc7 non-coding upstream 24003 33380665 ~ 33385589 (-)
G1540472 NA non-coding upstream 34327 33390989 ~ 33391236 (-)
G1540475 NA non-coding upstream 35239 33391901 ~ 33392302 (-)
G1540499 LOC106588209 non-coding upstream 77142 33433804 ~ 33434235 (-)
G1540500 LOC106588209 non-coding upstream 78128 33434790 ~ 33435085 (-)
G1540148 NA other downstream 416255 32899578 ~ 32936569 (-)
G1539348 NA other downstream 790704 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1294039 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1637643 31714506 ~ 31715181 (-)
LOC100136047 LOC106605923 other downstream 1660153 31684840 ~ 31692733 (-)
G1540473 LOC106581475 other upstream 34677 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 245812 33602474 ~ 33610948 (-)
LOC110496049 LOC106588217 other upstream 300979 33657641 ~ 33674304 (-)
G1541318 NA other upstream 805265 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1378712 34735374 ~ 34794929 (-)

Expression


Co-expression Network