G1540466 (exosc7)


Basic Information

Item Value
gene id G1540466
gene name exosc7
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33380665 ~ 33385589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1762950
CAACTTTGTGATGTGCTGATAAGGTTCAAATTTGATACAACTGAACATTCTATGCTAATAAGTTTGCCTGGGTGAGGACAGATGGTATGAAAAAGAGCACAGGCATCCTATTTCACCTCTGTCATCTCAAAGATGCTCTCTGGGTCCAGGCTTCCCCCCCCCACCTTCCTGACACAGGTGACCGTCCCCTTGTGTGTGACAGAGATGATCAGGCTGGCCACTGAACACGCCTTCTCCTGCAGCGTGGCGTCCACCACGTGCCTATGGCCCACCTTGCACAAGGTCACGATGCAGGGAACGTTCTCCACATTGAGTCGCATGCAGTCATAGGGGTCGTCTGACAGCTCtatttccttccctccttcctcatcCTCAGAGATGTGCACTTTGGGAATTTTTGTATTGAAGAGAGCTGCTTTAATTGCAACAGAGATGGCATCAAAAAGATTTCCATCACACTGCAGGAGCAGCACGTCCACATAGAGCACCCAGCAGTGTTCCCCTGGGCTGATGCAGAGGCTTTTCAGGTCCACACTGTATCTGTTGTTGAACACTTTGTACAGGGTGTTGCTCAACTCCATGCCCAGCTCATCACCACCCCGACCCTCAAATTCTGGTGTGGCATTGGCAGAGCAATCAACAAAAAACTCCAGGTAGCCTTCATCTGGGACCATGGGCCTTGGCTTTCCCATTTCAGCTTTGACTCCCACTAGCACGTCTGTATGCCCCAGTGTAACTTTGGCTGAGCCATCTGTATTTGACACCATGTCTGTCTCAATCTCCATGTGTCTGTAGTCCTCGCATCCTCGTCCATCAACCCGTAAGTCATCCCGTACACCATGCAAAATATACACCTTTTCAGCCTCACTGACTTGTACAGTAGCCATGATGCGTTGCACTAAAATACCACATGTG

Function

symbol description
exosc7 Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Orthologous to human EXOSC7 (exosome component 7).

NR:

description
exosome complex component RRP42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1762950 True 915 lncRNA 0.50 7 33380665 33385589

Neighbor

gene id symbol gene type direction distance location
LOC110496036 LOC106588206 coding downstream 1157 33366687 ~ 33379508 (-)
LOC110496796 osbpl10 coding downstream 71334 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 926282 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 962842 32365592 ~ 32417823 (-)
LOC118941133 NA coding downstream 1032984 32336621 ~ 32347681 (-)
cdcp1b cdcp1 coding upstream 6824 33392413 ~ 33414958 (-)
LOC110496042 ddah2 coding upstream 140552 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 175253 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding upstream 186425 33572014 ~ 33573707 (-)
LOC110496046 lynx1 coding upstream 194207 33579796 ~ 33581971 (-)
G1540456 tmem42 non-coding downstream 24003 33352824 ~ 33356662 (-)
G1540320 NA non-coding downstream 208572 33170529 ~ 33172093 (-)
G1540316 NA non-coding downstream 225572 33154844 ~ 33155093 (-)
G1540254 NA non-coding downstream 298015 33082428 ~ 33082650 (-)
G1540239 NA non-coding downstream 317019 33063416 ~ 33063646 (-)
G1540472 NA non-coding upstream 5400 33390989 ~ 33391236 (-)
G1540475 NA non-coding upstream 6312 33391901 ~ 33392302 (-)
G1540499 LOC106588209 non-coding upstream 48215 33433804 ~ 33434235 (-)
G1540500 LOC106588209 non-coding upstream 49201 33434790 ~ 33435085 (-)
G1540501 LOC106588209 non-coding upstream 49718 33435307 ~ 33435725 (-)
G1540148 NA other downstream 444096 32899578 ~ 32936569 (-)
G1539348 NA other downstream 818545 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1321880 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1665484 31714506 ~ 31715181 (-)
LOC100136047 LOC106605923 other downstream 1687994 31684840 ~ 31692733 (-)
G1540473 LOC106581475 other upstream 5750 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 216885 33602474 ~ 33610948 (-)
LOC110496049 LOC106588217 other upstream 272052 33657641 ~ 33674304 (-)
G1541318 NA other upstream 776338 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1349785 34735374 ~ 34794929 (-)

Expression


Co-expression Network