G1540473 (LOC106581475)


Basic Information

Item Value
gene id G1540473
gene name LOC106581475
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33391339 ~ 33391752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1762958
agagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcacactgagcacatgtgacagagtctggagacgccgtggagaaagttctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtgtggcatttctttggggggcctcacagccctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccctgtgtgagaccatatgctggtgctgttggctctgggttcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggagtggcccgcccgttcccctgaatctaattgagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1762958 True 414 TUCP 0.55 1 33391339 33391752

Neighbor

gene id symbol gene type direction distance location
LOC110496036 LOC106588206 coding downstream 11831 33366687 ~ 33379508 (-)
LOC110496796 osbpl10 coding downstream 82008 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 936956 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 973516 32365592 ~ 32417823 (-)
LOC118941133 NA coding downstream 1043658 32336621 ~ 32347681 (-)
cdcp1b cdcp1 coding upstream 661 33392413 ~ 33414958 (-)
LOC110496042 ddah2 coding upstream 134389 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 169090 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding upstream 180262 33572014 ~ 33573707 (-)
LOC110496046 lynx1 coding upstream 188044 33579796 ~ 33581971 (-)
G1540472 NA non-coding downstream 103 33390989 ~ 33391236 (-)
G1540466 exosc7 non-coding downstream 5750 33380665 ~ 33385589 (-)
G1540456 tmem42 non-coding downstream 34677 33352824 ~ 33356662 (-)
G1540320 NA non-coding downstream 219246 33170529 ~ 33172093 (-)
G1540316 NA non-coding downstream 236246 33154844 ~ 33155093 (-)
G1540475 NA non-coding upstream 149 33391901 ~ 33392302 (-)
G1540499 LOC106588209 non-coding upstream 42052 33433804 ~ 33434235 (-)
G1540500 LOC106588209 non-coding upstream 43038 33434790 ~ 33435085 (-)
G1540501 LOC106588209 non-coding upstream 43555 33435307 ~ 33435725 (-)
G1540521 NA non-coding upstream 70353 33462105 ~ 33462320 (-)
G1540148 NA other downstream 454770 32899578 ~ 32936569 (-)
G1539348 NA other downstream 829219 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1332554 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1676158 31714506 ~ 31715181 (-)
LOC100136047 LOC106605923 other downstream 1698668 31684840 ~ 31692733 (-)
LOC110496048 LOC106588215 other upstream 210722 33602474 ~ 33610948 (-)
LOC110496049 LOC106588217 other upstream 265889 33657641 ~ 33674304 (-)
G1541318 NA other upstream 770175 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1343622 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1745885 35137637 ~ 35138554 (-)

Expression


Co-expression Network