G1539887


Basic Information

Item Value
gene id G1539887
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33391585 ~ 33391843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1762333
caccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaactttctccacggcgtctccagactctgtcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacacCCACATGTGGACGTCActccctcataccaccctcatggagtctg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1762333 True 259 lncRNA 0.55 1 33391585 33391843

Neighbor

gene id symbol gene type direction distance location
exosc7 exosc7 coding upstream 1831 33380590 ~ 33389754 (+)
LOC110496035 tmem42 coding upstream 34894 33352795 ~ 33356691 (+)
LOC110496034 LOC106588202 coding upstream 219471 33086601 ~ 33172114 (+)
LOC110496033 LOC106588201 coding upstream 341204 32994534 ~ 33050381 (+)
LOC110496032 LOC106588200 coding upstream 432527 32720349 ~ 32964969 (+)
nrm nrm coding downstream 28991 33420834 ~ 33426552 (+)
LOC110496040 LOC106588209 coding downstream 41523 33433366 ~ 33450101 (+)
LOC110496797 LOC106570068 coding downstream 65079 33455560 ~ 33458964 (+)
LOC110496041 LOC106588210 coding downstream 88253 33480096 ~ 33489024 (+)
LOC100136630 LOC106570065 coding downstream 116993 33508836 ~ 33512426 (+)
G1539886 NA non-coding upstream 365 33390998 ~ 33391220 (+)
G1539824 NA non-coding upstream 5184 33292711 ~ 33386401 (+)
G1539677 NA non-coding upstream 321438 33069927 ~ 33070147 (+)
G1539674 NA non-coding upstream 324574 33066781 ~ 33067011 (+)
G1539890 cdcp1 non-coding downstream 3111 33394954 ~ 33398266 (+)
G1540519 NA non-coding downstream 69389 33461232 ~ 33461432 (+)
G1540520 NA non-coding downstream 69679 33461522 ~ 33461832 (+)
G1540522 NA non-coding downstream 70601 33462444 ~ 33462735 (+)
G1539671 LOC106582599 other upstream 331728 33058990 ~ 33059857 (+)
G1539641 NA other upstream 371041 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1637394 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1811265 31578096 ~ 31580320 (+)
LOC110496006 LOC106588175 other upstream 1819346 31568375 ~ 31572239 (+)
G1540551 NA other downstream 97494 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 143433 33535229 ~ 33537569 (+)
G1540996 NA other downstream 686875 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 736498 34127192 ~ 34133734 (+)

Expression


Co-expression Network