G1540522


Basic Information

Item Value
gene id G1540522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33462444 ~ 33462735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763011
atgtggagatcatccgttcacgtaCTCTGCGCCTCACAAAGACACaccaattccaaaactactaccttataaacacaagtgtaaagggataaagaatatgtacacaaagatatatgaatgagtgatggtacagaacggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtaatgtagggtatgtaaacattatattaagtagcattgtttaaagtggctagtgatatatttttacatcaatttccattattaaagtggctggagttgag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763011 True 292 lncRNA 0.36 1 33462444 33462735

Neighbor

gene id symbol gene type direction distance location
LOC110496797 LOC106570068 coding upstream 3480 33455560 ~ 33458964 (+)
LOC110496040 LOC106588209 coding upstream 12343 33433366 ~ 33450101 (+)
nrm nrm coding upstream 35892 33420834 ~ 33426552 (+)
exosc7 exosc7 coding upstream 72690 33380590 ~ 33389754 (+)
LOC110496035 tmem42 coding upstream 105753 33352795 ~ 33356691 (+)
LOC110496041 LOC106588210 coding downstream 17361 33480096 ~ 33489024 (+)
LOC100136630 LOC106570065 coding downstream 46101 33508836 ~ 33512426 (+)
LOC118941240 NA coding downstream 47477 33510212 ~ 33510343 (+)
LOC118941235 NA coding downstream 48067 33510802 ~ 33510928 (+)
LOC118941241 NA coding downstream 49095 33511830 ~ 33511959 (+)
G1540520 NA non-coding upstream 612 33461522 ~ 33461832 (+)
G1540519 NA non-coding upstream 1012 33461232 ~ 33461432 (+)
G1539890 cdcp1 non-coding upstream 64178 33394954 ~ 33398266 (+)
G1539887 NA non-coding upstream 70601 33391585 ~ 33391843 (+)
G1540540 NA non-coding downstream 11722 33474457 ~ 33474722 (+)
G1540542 NA non-coding downstream 12839 33475574 ~ 33475785 (+)
G1540543 NA non-coding downstream 13574 33476309 ~ 33476819 (+)
G1540545 NA non-coding downstream 14575 33477310 ~ 33477599 (+)
G1540561 NA non-coding downstream 38180 33500915 ~ 33501117 (+)
G1539671 LOC106582599 other upstream 402587 33058990 ~ 33059857 (+)
G1539641 NA other upstream 441900 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1708253 31753710 ~ 31754191 (+)
LOC110496008 LOC106588176 other upstream 1882124 31578096 ~ 31580320 (+)
G1540551 NA other downstream 26602 33489337 ~ 33491121 (+)
LOC110496043 LOC106588212 other downstream 72541 33535229 ~ 33537569 (+)
G1540996 NA other downstream 615983 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 665606 34127192 ~ 34133734 (+)
mbpa LOC106588233 other downstream 1420779 34883492 ~ 34898413 (+)

Expression


Co-expression Network