G1540561


Basic Information

Item Value
gene id G1540561
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33500915 ~ 33501117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763051
ACATGCTTGCCAACTAGATATAATGACGAGTTCAATGTACAATGTCCTAAGTGCAATCGAGAAAACACCACCTTCCTAATCTGACCTTTGAATCTTGGTCCACCGACCTTTCTTTCGAGGGCATATAAATGCTGGCACTTGGGCTCAGAGTCCCATATCTTATGCCACACATCTATCCAAATGCCTCTGATCTTACATTTGGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC109201852

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763051 True 203 lncRNA 0.43 1 33500915 33501117

Neighbor

gene id symbol gene type direction distance location
LOC110496041 LOC106588210 coding upstream 11891 33480096 ~ 33489024 (+)
LOC110496797 LOC106570068 coding upstream 41951 33455560 ~ 33458964 (+)
LOC110496040 LOC106588209 coding upstream 50814 33433366 ~ 33450101 (+)
nrm nrm coding upstream 74363 33420834 ~ 33426552 (+)
exosc7 exosc7 coding upstream 111161 33380590 ~ 33389754 (+)
LOC100136630 LOC106570065 coding downstream 7719 33508836 ~ 33512426 (+)
LOC118941240 NA coding downstream 9095 33510212 ~ 33510343 (+)
LOC118941235 NA coding downstream 9685 33510802 ~ 33510928 (+)
LOC118941241 NA coding downstream 10713 33511830 ~ 33511959 (+)
LOC110496043 LOC106588212 coding downstream 34112 33535229 ~ 33537569 (+)
G1540545 NA non-coding upstream 23316 33477310 ~ 33477599 (+)
G1540543 NA non-coding upstream 24096 33476309 ~ 33476819 (+)
G1540542 NA non-coding upstream 25130 33475574 ~ 33475785 (+)
G1540540 NA non-coding upstream 26193 33474457 ~ 33474722 (+)
G1540522 NA non-coding upstream 38180 33462444 ~ 33462735 (+)
G1540562 NA non-coding downstream 97 33501214 ~ 33501433 (+)
G1540563 NA non-coding downstream 2148 33503265 ~ 33503483 (+)
G1540553 NA non-coding downstream 13091 33514208 ~ 33517215 (+)
G1540567 NA non-coding downstream 23206 33524323 ~ 33524542 (+)
G1540568 NA non-coding downstream 23696 33524813 ~ 33525053 (+)
G1540551 NA other upstream 9794 33489337 ~ 33491121 (+)
G1539671 LOC106582599 other upstream 441058 33058990 ~ 33059857 (+)
G1539641 NA other upstream 480371 33020228 ~ 33020544 (+)
G1538208 LOC106588182 other upstream 1746724 31753710 ~ 31754191 (+)
G1540996 NA other downstream 577601 34078718 ~ 34079074 (+)
LOC110496058 LOC106588349 other downstream 627224 34127192 ~ 34133734 (+)
mbpa LOC106588233 other downstream 1382397 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1781486 35282603 ~ 35283706 (+)

Expression


Co-expression Network