G1540648


Basic Information

Item Value
gene id G1540648
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33508353 ~ 33508611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763160
ccctttgctatgagactcgaaatggagctcaggtgcatcctgtttccattgatcatccttgagatgtttcttcaacttgattggagtccacctgtggtaaattcaattgattggacatgatttagaaaggcacacacctgtctgtataaggtcccacagttgatagtgtatttcaaagcaaaaaccaagccatgaagttgaaggaattgtccgtagagctcagcgACAGGATTgagtcgagacacagatctggggaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763160 True 259 lncRNA 0.44 1 33508353 33508611

Neighbor

gene id symbol gene type direction distance location
cdcp1b cdcp1 coding downstream 93395 33392413 ~ 33414958 (-)
LOC110496036 LOC106588206 coding downstream 128845 33366687 ~ 33379508 (-)
LOC110496796 osbpl10 coding downstream 199022 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 1053970 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 1090530 32365592 ~ 32417823 (-)
LOC110496042 ddah2 coding upstream 17530 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 52231 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding upstream 63403 33572014 ~ 33573707 (-)
LOC110496046 lynx1 coding upstream 71185 33579796 ~ 33581971 (-)
LOC110496048 LOC106588215 coding upstream 98338 33602474 ~ 33610948 (-)
G1540640 NA non-coding downstream 10054 33498069 ~ 33498299 (-)
G1540637 NA non-coding downstream 13551 33494599 ~ 33494802 (-)
G1540636 NA non-coding downstream 13825 33494123 ~ 33494528 (-)
G1540546 NA non-coding downstream 30047 33478029 ~ 33478306 (-)
G1540544 NA non-coding downstream 31534 33476283 ~ 33476819 (-)
G1540627 LOC106570065 non-coding upstream 208 33508819 ~ 33513984 (-)
G1540656 NA non-coding upstream 29359 33537970 ~ 33538194 (-)
G1540713 NA non-coding upstream 111825 33620436 ~ 33621322 (-)
G1540633 NA non-coding upstream 114936 33623547 ~ 33623787 (-)
G1540717 NA non-coding upstream 118368 33626979 ~ 33627240 (-)
G1540473 LOC106581475 other downstream 116601 33391339 ~ 33391752 (-)
G1540148 NA other downstream 571784 32899578 ~ 32936569 (-)
G1539348 NA other downstream 946233 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1449568 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1793172 31714506 ~ 31715181 (-)
LOC110496049 LOC106588217 other upstream 149030 33657641 ~ 33674304 (-)
G1541318 NA other upstream 653316 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1226763 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1629026 35137637 ~ 35138554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G385758 NA non-coding NC_047621.1 CM018567.1 12826786 ~ 12827523 (-)