G1540627 (LOC106570065)


Basic Information

Item Value
gene id G1540627
gene name LOC106570065
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33508819 ~ 33513984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763130
gcaaattatggtgatgagcatttggtcacctacaaacaagatttctggctctcacagacctgtaacttctttaggaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcaatataaaagacacctgtccacaacctcaaacagtcacactcaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaattgTAGTTCTGCACCAGGctaggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagtcatacaagaccactgataatctccctccatctgggactccacgcaagatctcaccccgtgggggcaaaattatcacaagaacggtgagcaaaaagccagtacatgtccaggcccgtctaaagtttgctcgagagcatttggatgatccagaagattgggagaatgtcatctgaccatgacaccaaaatataacttttttggtaaaaaaaaaaaaaaacttgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacaactgatccgtgtaaaggaaagaatggggccatgtatcatgagattttgagtgaacctcctaccatcagcaagggtattgaagatgaaacgtggttgggtctttcagcatgacaatgattccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcaaccccatagaaaatcttttggagggagttgaaagtctgtgttgcccagcagtagccccaaaacatcactgctctagaggagagctgcatggaggaatgggccaaaataccagcaagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctcttatatactctttgttggcaatgacaaactattgagataaacttttgttattgaccaaatacttattttccaccataattggcaaattttgaaaaaatcctaatgtgattttctggatttctctcattttgtctgtcatagtccaagtgtacctatgatgaaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttgccccactgtatatttagtgCAGTAACTCAAATAAACTGGCATTGTTTGTCACAGTACTTAGGTGTTGTTGCGAAGTCCTCATTAGCGATAAAGCACTGACATTTACCTTTTACTTCAGTAGTCCAATCAATAGTATGCACCAAAGATGCTGCATTAATTTATATTCAAGTAATTTAGTAGATTATCAAATAAATGAATTTAAAACCTTTGACTCATTCCTCAACTGTCCTGTATTCAGGCCTTTATAAGTGTTACTAAACATCATACCACATTCAACTTTTTAAAAAAACAATGGAAGTCCTCAAATGTATTTcctcatttaattttttttagaaAGGAACAATTTTAACGGTTGGACTTGGCGACCCTCTCCAACTCGTCCTTCTTCTTGATGGCGTAGGAGTTAGAAGAACCCtgacaaaacacaaacacactggtcAACCCCGAAGAATTTGACATGAACACTGGTGAACAAACCCTCCCAACATAACAGTAGACGTGAAAAATCTGATTAACTTGTTCAAAACCAAATCTGTATGGTACTGAAACACAATTGAGACTACACCTTCAACAAAAAGTCTCACCTTGGCTGCATTGATCAGCTCATCGGCAAGGCACTCTGCGATAGTCTTGATGTTCCTGAAAGCAGCTTCTCTTGCTCCAGTGCAAAGTAGCCAGATCGCCTGGTTGACTCTACGCAGAGGGGACACATCCACAGCTTGCCTCCTAACGGTACCAGCACGACCAATACGGGTGGAGTCCTCACGAGGTCCGCTGTTTATGATGGCATTGACCAGCACCTGCAGGGGGTTCTCCCCGGTCAGCAAGTGGATGATCTCGAAGGCGTGCTTCACAATGCGACAGGTCATCAGCTTCTTGCCGTTGTTGCGGCCATGCATCATCATAGAGTTGGTGAGACGTTCCACAATGGGGCACTGGGCCTTGCGGAAACGCTTGGCAGCATAACGACCTCCAGAGTGTGGTAGGTACTTAGCGTACTTCTCCTTCACAGCAATGTAATCCTGAGTTGAAGGAAAAAGCATCATCAATACTAGTTCCCTTCCCAATAACTTACATTTCAATGTCCAGGTTAACAGGGAATACATCGATGTTCATGTTTCTGAGCTGGTGATTGACTGGGCCACATGAGACTACAGCCAATGAATATGCAAAGTAGTTTACTCTGCGAGCACTCTAGCACACCAAGACAATGAGGGTTGTAAAGGCGTGACTCTAGCCTCgcttacacacacaaaaaaaacaattatgTTTTATAGTGCCTAGTCACAAATCAAACATTGAAATGCCCTACCTGCAGGGAGATGTCATTGATCTGAACATCGTCTGTGCTCCATTTCCCAAAGAGCTTGATTTCTGGCGTTTCAGCCACTGCAGGGGCAGTCTCCCACGACTCTGAAGTCACTGATGAAAAACAGAAGATTTAGTCAGGTAACATTGATGGATTTAATTACGAGAGTCAAGGTACCACAATGTCTGACCCCAGTTCCATGGCAAAGGCCTTGTAATAATGGTATCCCACACTAATCAATGATATTacaaaattgtaattacttcgacACTATGCCCCATTTATTGCCTCCCTCCCATATCCTACCttatttgtacacactgtatatagactttattattcactgtatgtttgtttattccatgtgtaactctgttgtgtgtcgaactgctttgctttatcttgaccaggtcgcagttgtaaatgagatgttctcaactagtctacccggttaaataaaggtgaaatcaaaaacAGTAAAAATTACCACATCACGATATTGATACTACCACATTACGGCTCAACTAGTTAGCATAATGCTAGGTGACATGAGAAAATGATTCATGATAAAGCCATCAACATCAGGAAGGAATGGCTGCCACTGTCAGTAACACACGAAGAGCTAGCTAACCTGCTAGCCAACGTTATCCATTATACAGTCAACGTTAGTGATAGCAACGTGGGCTGGGCTACACACGGACAGCACAAATATATTGGTGTAAGTAGTTAAATTATATTAAAAAGTCGGGATAAAAACTTAAAGGCAATGTGAATGAGAGCAGACACACGACAGTAGGCCCAAAAGGCTAAAGTCAGACAGAGTCTACTAGCGAACGAGTTATATGGCTAATGTCATTATGAGCAAAACATGAGATAAACATGTGTTTAACACCAAACTGAACATCTTGCATAGCAACAATGTTCCGAATGGTCCAGGGAGGACGCTAAATAGGAAGCTAACTAGCAGTGTCGCACGTGTAAGCATGAAGTTAATCTGCCCCGGCTGAAGGCCGGTAAAAACACTCGGGTGATTTAAAAACGACTTCGGACTATAAACGGATTTACTTCAGACTCAAAGTCAAACAAGCAATGTTACACGTACGATAGTTGGACATTGTGCGTTTTCATGCAATTTTGGCCTTGAAAATTGTAACATTTTTCCACTCACTTGTGTCTGCCGTTCTGCACCACACTTCTCAAAGCCGGAAAAGGGCCTGTTCAGGGCGCATCAAACAGATATACCGGGAGGCGGAAATGAGGTAACTGGATTGCACTGCTTTTATGGAGTTGTAGTTCAATGGCAGAAATCCCATCTCcaaaatgtacag
>TU1763132
gcaaattatggtgatgagcatttggtcacctacaaacaagatttctggctctcacagacctgtaacttctttaggaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcaatataaaagacacctgtccacaacctcaaacagtcacactcaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaattgTAGTTCTcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagtcatacaagaccactgataatctccctccatctgggactccacgcaagatctcaccccgtgggggcaaaattatcacaagaacggtgagcaaaaagccagtacatgtccaggcccgtctaaagtttgctcgagagcatttggatgatccagaagattgggagaatgtcatctgaccatgacaccaaaatataacttttttggtaaaaaaaaaaaaaaacttgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacaactgatccgtgtaaaggaaagaatggggccatgtatcatgagattttgagtgaacctcctaccatcagcaagggtattgaagatgaaacgtggttgggtctttcagcatgacaatgattccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatcaaccccatagaaaatcttttggagggagttgaaagtctgtgttgcccagcagtagccccaaaacatcactgctctagaggagagctgcatggaggaatgggccaaaataccagcaagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctcttatatactctttgttggcaatgacaaactattgagataaacttttgttattgaccaaatacttattttccaccataattggcaaattttgaaaaaatcctaatgtgattttctggatttctctcattttgtctgtcatagtccaagtgtacctatgatgaaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttgccccactgtatatttagtgCAGTAACTCAAATAAACTGGCATTGTTTGTCACAGTACTTAGGTGTTGTTGCGAAGTCCTCATTAGCGATAAAGCACTGACATTTACCTTTTACTTCAGTAGTCCAATCAATAGTATGCACCAAAGATGCTGCATTAATTTATATTCAAGTAATTTAGTAGATTATCAAATAAATGAATTTAAAACCTTTGACTCATTCCTCAACTGTCCTGTATTCAGGCCTTTATAAGTGTTACTAAACATCATACCACATTCAACTTTTTAAAAAAACAATGGAAGTCCTCAAATGTATTTcctcatttaattttttttagaaAGGAACAATTTTAACGGTTGGACTTGGCGACCCTCTCCAACTCGTCCTTCTTCTTGATGGCGTAGGAGTTAGAAGAACCCtgacaaaacacaaacacactggtcAACCCCGAAGAATTTGACATGAACACTGGTGAACAAACCCTCCCAACATAACAGTAGACGTGAAAAATCTGATTAACTTGTTCAAAACCAAATCTGTATGGTACTGAAACACAATTGAGACTACACCTTCAACAAAAAGTCTCACCTTGGCTGCATTGATCAGCTCATCGGCAAGGCACTCTGCGATAGTCTTGATGTTCCTGAAAGCAGCTTCTCTTGCTCCAGTGCAAAGTAGCCAGATCGCCTGAGACTGGTTGACTCTACGCAGAGGGGACACATCCACAGCTTGCCTCCTAACGGTACCAGCACGACCAATACGGGTGGAGTCCTCACGAGGTCCGCTGTTTATGATGGCATTGACCAGCACCTGCAGGGGGTCTCCCCGGTCAGCAAGTGGATGATCTCGAAGGCGTGCTTCACAATGCGACAGGTCATCAGCTTCTTGCCGTTGTTGCGGCCATGCATCATCATAGAGTTGGTGAGACGTTCCACAATGGGGCACTGGGCCTTGCGGAAACGCTTGGCAGCATAACGACCTCCAGAGTGTGGTAGGTACTTAGCGTACTTCTCCTTCACAGCAATGTAATCCTGCAGGGAGATGTCATTGATCTGAACATCGTCTGTGCTCCATTTCCCAAAGAGCTTGATTTCTGGCGTTTCAGCCACTGCAGGGGCAGTCTCCCACGACTCTGAAGTCATTGTGTCTGCCGTTCTGCACCACACTTCTCAAAGCCGGAAAAGGGCCTGTTCAGGGCGCATCAAACAGATATACCGGGAGGCGGAAATGAGGTAACTGGATTGCACTGCTTTTATGGAGTTGTAGTTCAATGGCAGAAATCCCATCTCcaaaatgtacag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763130 False 3889 lncRNA 0.42 3 33508819 33513984
TU1763132 True 2509 lncRNA 0.44 6 33508819 33513984

Neighbor

gene id symbol gene type direction distance location
cdcp1b cdcp1 coding downstream 93861 33392413 ~ 33414958 (-)
LOC110496036 LOC106588206 coding downstream 129311 33366687 ~ 33379508 (-)
LOC110496796 osbpl10 coding downstream 199488 33172426 ~ 33309331 (-)
eomesa eomesa coding downstream 1054436 32450001 ~ 32454383 (-)
LOC110496030 LOC106588196 coding downstream 1090996 32365592 ~ 32417823 (-)
LOC110496042 ddah2 coding upstream 12157 33526141 ~ 33533687 (-)
LOC110496044 LOC106588213 coding upstream 46858 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding upstream 58030 33572014 ~ 33573707 (-)
LOC110496046 lynx1 coding upstream 65812 33579796 ~ 33581971 (-)
LOC110496048 LOC106588215 coding upstream 92965 33602474 ~ 33610948 (-)
G1540648 NA non-coding downstream 208 33508353 ~ 33508611 (-)
G1540640 NA non-coding downstream 10520 33498069 ~ 33498299 (-)
G1540637 NA non-coding downstream 14017 33494599 ~ 33494802 (-)
G1540636 NA non-coding downstream 14291 33494123 ~ 33494528 (-)
G1540546 NA non-coding downstream 30513 33478029 ~ 33478306 (-)
G1540656 NA non-coding upstream 23986 33537970 ~ 33538194 (-)
G1540713 NA non-coding upstream 106452 33620436 ~ 33621322 (-)
G1540633 NA non-coding upstream 109563 33623547 ~ 33623787 (-)
G1540717 NA non-coding upstream 112995 33626979 ~ 33627240 (-)
G1541007 NA non-coding upstream 142741 33656725 ~ 33656944 (-)
G1540473 LOC106581475 other downstream 117067 33391339 ~ 33391752 (-)
G1540148 NA other downstream 572250 32899578 ~ 32936569 (-)
G1539348 NA other downstream 946699 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1450034 32057280 ~ 32058819 (-)
G1538595 NA other downstream 1793638 31714506 ~ 31715181 (-)
LOC110496049 LOC106588217 other upstream 143657 33657641 ~ 33674304 (-)
G1541318 NA other upstream 647943 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1221390 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1623653 35137637 ~ 35138554 (-)

Expression


Co-expression Network