G1540713


Basic Information

Item Value
gene id G1540713
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33620436 ~ 33621322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763231
gcttctctacagacataggaattctccagttggaacgttattgaagatttatgataacaacatcctaaagattgattctatacttagtttgacaagtttcttcggcTTGTAATATaaatttttgaagttttcgtccgacgttcggctggacctgcacgagcatttggatttgtgtactaaacgcgctaacaaaagtagctacttggacataaataatggacattatcgaacaaatcaagcatttattgtggaactgcgattcctgggagtgcattctgatgaagatcatcaaaggtaaggaaatatTTGTAAtgtgatttctgatttctgttgactccaacatggcggataaataaaaaaaattctgagcgccatctcagattattgcatggtttgctttttccgttatttatttttttaatctgacacagcggttgcattaaggaaaagtctatctatatttccatgtctaagaATTGgattttcatcgacatttattatgagtatttctgtaaaatgatgtggctctctacaatatcactggatgtttttggaactagtgaacgtaatgcgccaatgtatactgagtttttttttacccccttttctccctaatttcgtggtatccaattgttactaattactatcttgtctcattgctagatttttttaatataaatatgcactttatcaaacaaaacatacatgtattgtataacatgaagtcctatgagtgtcatctgatgaagaccatcaaaggttagtgattcattttatctctgtttgtgcttttgtgactcctctctttggctggaaaaatggctgggtttttctgtgagttggtggtcacctaacataatcgtctGTGgtactttcgctgtaaagcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763231 True 887 lncRNA 0.35 1 33620436 33621322

Neighbor

gene id symbol gene type direction distance location
LOC110496048 LOC106588215 coding downstream 9488 33602474 ~ 33610948 (-)
LOC110496046 lynx1 coding downstream 38465 33579796 ~ 33581971 (-)
LOC110496044 LOC106588213 coding downstream 46570 33560842 ~ 33573866 (-)
LOC110496045 lynx1 coding downstream 46729 33572014 ~ 33573707 (-)
LOC110496042 ddah2 coding downstream 86749 33526141 ~ 33533687 (-)
LOC110496928 NA coding upstream 21604 33642926 ~ 33652838 (-)
LOC110496049 LOC106588217 coding upstream 36376 33657641 ~ 33674304 (-)
LOC110496050 csnk2b coding upstream 71070 33692392 ~ 33695909 (-)
LOC110496051 LOC106588219 coding upstream 75841 33697163 ~ 33746785 (-)
vps72a vps72 coding upstream 162612 33783934 ~ 33813301 (-)
G1540656 NA non-coding downstream 82242 33537970 ~ 33538194 (-)
G1540627 LOC106570065 non-coding downstream 106452 33508819 ~ 33513984 (-)
G1540648 NA non-coding downstream 111825 33508353 ~ 33508611 (-)
G1540640 NA non-coding downstream 122137 33498069 ~ 33498299 (-)
G1540637 NA non-coding downstream 125634 33494599 ~ 33494802 (-)
G1540633 NA non-coding upstream 2225 33623547 ~ 33623787 (-)
G1540717 NA non-coding upstream 5657 33626979 ~ 33627240 (-)
G1541007 NA non-coding upstream 35403 33656725 ~ 33656944 (-)
lrp12 lrp12 non-coding upstream 232565 33828341 ~ 33867431 (-)
G1541115 NA non-coding upstream 253928 33875250 ~ 33939003 (-)
G1540473 LOC106581475 other downstream 228684 33391339 ~ 33391752 (-)
G1540148 NA other downstream 683867 32899578 ~ 32936569 (-)
G1539348 NA other downstream 1058316 32561726 ~ 32562120 (-)
atp5if1a LOC106588193 other downstream 1561651 32057280 ~ 32058819 (-)
G1541318 NA other upstream 540605 34161927 ~ 34162458 (-)
atp9b atp9b other upstream 1114052 34735374 ~ 34794929 (-)
G1542988 sast other upstream 1516315 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 1553984 35151351 ~ 35203984 (-)

Expression


Co-expression Network