G1540621


Basic Information

Item Value
gene id G1540621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33621390 ~ 33621658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763121
gactaaagagctcccatccggctccacaacatagtagaagcctcattcaagtttctaaagacggttgacatctagtggaagccctaagaagtgcaactttatccatatcccactgtgtattcaataggggcagggttgaaaatcgaccaacctcagatttcccacttcctgtttggatttcttctcaggtttttgcctgccatatgagttctgttatactcacatacatcattcaaacagttttagaaacttcagagtgttttatatcc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763121 True 269 lncRNA 0.41 1 33621390 33621658

Neighbor

gene id symbol gene type direction distance location
LOC110496043 LOC106588212 coding upstream 83821 33535229 ~ 33537569 (+)
LOC100136630 LOC106570065 coding upstream 108964 33508836 ~ 33512426 (+)
LOC110496055 LOC106588221 coding downstream 317024 33938682 ~ 34059960 (+)
LOC110496056 dpy19l4 coding downstream 458450 34080108 ~ 34088560 (+)
ints8 ints8 coding downstream 470589 34092247 ~ 34116282 (+)
LOC110496058 LOC106588349 coding downstream 505534 34127192 ~ 34133734 (+)
trhrb LOC106588145 coding downstream 639654 34261312 ~ 34265470 (+)
G1540606 LOC106588215 non-coding upstream 13285 33601918 ~ 33608105 (+)
G1540590 NA non-coding upstream 38643 33571633 ~ 33582747 (+)
G1540588 NA non-coding upstream 42375 33570279 ~ 33579015 (+)
G1540586 NA non-coding upstream 63290 33554786 ~ 33558100 (+)
G1540568 NA non-coding upstream 96337 33524813 ~ 33525053 (+)
G1540721 NA non-coding downstream 14711 33636369 ~ 33637496 (+)
G1540722 NA non-coding downstream 16977 33638635 ~ 33639167 (+)
G1540729 NA non-coding downstream 68592 33690250 ~ 33693278 (+)
G1540819 NA non-coding downstream 194515 33816173 ~ 33816464 (+)
G1540851 NA non-coding downstream 240581 33862239 ~ 33863152 (+)
G1540551 NA other upstream 130269 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 162966 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 561533 33058990 ~ 33059857 (+)
G1539641 NA other upstream 600846 33020228 ~ 33020544 (+)
G1540996 NA other downstream 457060 34078718 ~ 34079074 (+)
mbpa LOC106588233 other downstream 1261856 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1660945 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1753586 35373871 ~ 35386463 (+)

Expression


Co-expression Network