G1540721


Basic Information

Item Value
gene id G1540721
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33636369 ~ 33637496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763240
TGTTCTAACAAATTTTAAAGCttttattacagcatagcaaagattaaaaacagcTGAATCTGTGAAATTGCTTTAACAGACATTTGCGGTTGCACAAGTGTTGGTCTTCAAAGATTCAGTAGACTATTAAACAAACCCTCaacaggcaacagaagcaagATCATTTTTATGTCtgtaaaaagtattcagaccccttgaccttttccacattttgttaggttacagccttattctaaaatgtgttaaaTTGTTTTCTCTTCAttagtctacacacaatatcccataatgacaaagcaaaaacagatttagaaatgtttgctaattttaTGAAAaaaggaaatattacatttaagtattcagactctttactcggtactttgttgtagcacctttggcagagattacagcctcgaggcttcttgggtatgaggctacAAACTCTGTAGGGTATGACTCTACTGGCTCtggcactcaaggacattcagagatttctCCCaatgccactcctgtgttgtcctgGCTGTGTACTTAGCctcattgtcatgttggaaggtgaacctctgctCCAGTCGGAGGTCCCGAGAGCTCTGGTTTAGGTTCAGCAAaaatatctctgtactttgctccattcatatctgcctcgatcctgactagtctcccagtccctgacgcaaAAAAatgatccccacagcatgattctgccaccaacatgcttcaccgtagggatggtgccaggtttagtccagacgtgacgcttggcattcaggctaaaataattcaatcttggtttcatcagaccagataatcttgtttctcaaggtctgtgagtctttaggtgcattttggaaaactccaagtgggctgtcgtgccgtttactgaggagtggcttccgtctggccactctaccataaagttctgattggtgaagtgctgcagagatgattgtccttctggaaggtcctcccatctccacagaggaactctggagctctgtcacagtgaccatcaggttcttggtcacctccctgatcaagacccttctcccccgattcctCAGTTTGGgtgggcgaccagctctaggaacagCCTTTGTTCTTCCaaccttcttccatttaagaatgatggag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763240 True 1128 lncRNA 0.43 1 33636369 33637496

Neighbor

gene id symbol gene type direction distance location
LOC110496043 LOC106588212 coding upstream 98800 33535229 ~ 33537569 (+)
LOC100136630 LOC106570065 coding upstream 123943 33508836 ~ 33512426 (+)
LOC110496055 LOC106588221 coding downstream 301186 33938682 ~ 34059960 (+)
LOC110496056 dpy19l4 coding downstream 442612 34080108 ~ 34088560 (+)
ints8 ints8 coding downstream 454751 34092247 ~ 34116282 (+)
LOC110496058 LOC106588349 coding downstream 489696 34127192 ~ 34133734 (+)
trhrb LOC106588145 coding downstream 623816 34261312 ~ 34265470 (+)
G1540621 NA non-coding upstream 14711 33621390 ~ 33621658 (+)
G1540606 LOC106588215 non-coding upstream 28264 33601918 ~ 33608105 (+)
G1540590 NA non-coding upstream 53622 33571633 ~ 33582747 (+)
G1540588 NA non-coding upstream 57354 33570279 ~ 33579015 (+)
G1540586 NA non-coding upstream 78269 33554786 ~ 33558100 (+)
G1540722 NA non-coding downstream 1139 33638635 ~ 33639167 (+)
G1540729 NA non-coding downstream 52754 33690250 ~ 33693278 (+)
G1540819 NA non-coding downstream 178677 33816173 ~ 33816464 (+)
G1540851 NA non-coding downstream 224743 33862239 ~ 33863152 (+)
G1540886 NA non-coding downstream 270735 33908231 ~ 33908628 (+)
G1540551 NA other upstream 145248 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 177945 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 576512 33058990 ~ 33059857 (+)
G1539641 NA other upstream 615825 33020228 ~ 33020544 (+)
G1540996 NA other downstream 441222 34078718 ~ 34079074 (+)
mbpa LOC106588233 other downstream 1246018 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1645107 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1737748 35373871 ~ 35386463 (+)

Expression


Co-expression Network