G1540729


Basic Information

Item Value
gene id G1540729
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33690250 ~ 33693278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763250
TGAGAATTCTGAATCCTTGTCACTCTTCCACGGTTGCAAAAaaccacagacatacagtaccagtcaaaagtttggacaggtactgtacattCATTCTAATCTTGACAAATCCATCCTTATTGTTCTGAAATCAAATCATATATAAAGCATTCTACTTTTTGCCACAAGGACTCAAACGCACATGTGCAGTAGGGTGATGAAACCCCTACATCACAAACAAAAAAACTTCTCCCCAAATAGAAGCAGATTTTCTGTCGCTATATTTTACATTAATATTTATATTATGTGTGGAGGGTCACCAGTCAAGTCAGTGCCCGTTGTGGAGAGAGATGAGTCCTGTTGTAGTGAAACCAGCCCAGCAACATGTGACAGAGCTGACATTCTCACCGTGCAGTACCAGCACAAACAAGACTGTTGTTTTGGGTGACgcacacagagacagtaggtaggttGGTATGTCTTTTCTGGGTCATTCTAGAACATTTAATTCATTTCAGGTTTATTTGTGTCTATCCTATGTCGCACATATACAAATTCAAAGCTATAATGTGTCCTAGACTCGCACTTCCTGTAAACCACAAATCACAGCGCCCGTGCGTCTCTGTTTAAGGCAAATTTAACAGAACACTATTGTGAATAACCACTTTGACACACTGGCCTCAGTGAGTGTCACACAATAAAAGAGTGACACAAGCCTGAGTGTGTGACTTGGTAAAACAATGGTTTACAGGAGCAGGTGAAACGGCAACACCCTTAGTGACAGATTTTGTCCTTATCATCGACCAAGCAGTCTCTGTGAGAGCCAGCCAGTGTACATGCGTATGGGGGTAGAGCAGGGATTGCTATTCAACCAGTGGTGACGGTCTACCACGACCCTTTACCAAACCGTGCCAAAGACAGAACAGAAAACAAACAGAACATGGCGAGAGTTCACCATCGGAGCAAAATGGGGTAATATCACAAAAGGAAACAGTAGCGTCAAATCCAATAACATCCATGGACTTTCTTTCCCTCCACCTTTTCTGTTTTGGCACTGGTGAGTTTGGTAACAGATGCATGTaattctaagtgtgtgtgtgtgtgtgtgggtttgggaTTAGAACCTGTGCGTTTGTCTCGCTCACATTTAAACGTCCTAACCTAAACAAAATAATAACATCTGCAGTATGGGGAGGAGGCATCTGTATGGAGCTTGGTGCAGCTGACCCGTCCCCGCAATCATcatcttctctcccttctctttctctctgggcaTTAGCGGATGGCTTTGACAGGGCTCTTGAAGCTGGAGGCTGCTTGCAGCTGGAGCTGGTAGGCCATGGGGTGAATCTTGAATCCAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763250 True 1340 lncRNA 0.44 2 33690250 33693278

Neighbor

gene id symbol gene type direction distance location
LOC110496043 LOC106588212 coding upstream 152681 33535229 ~ 33537569 (+)
LOC100136630 LOC106570065 coding upstream 177824 33508836 ~ 33512426 (+)
LOC110496055 LOC106588221 coding downstream 245404 33938682 ~ 34059960 (+)
LOC110496056 dpy19l4 coding downstream 386830 34080108 ~ 34088560 (+)
ints8 ints8 coding downstream 398969 34092247 ~ 34116282 (+)
LOC110496058 LOC106588349 coding downstream 433914 34127192 ~ 34133734 (+)
trhrb LOC106588145 coding downstream 568034 34261312 ~ 34265470 (+)
G1540722 NA non-coding upstream 51083 33638635 ~ 33639167 (+)
G1540721 NA non-coding upstream 52754 33636369 ~ 33637496 (+)
G1540621 NA non-coding upstream 68592 33621390 ~ 33621658 (+)
G1540606 LOC106588215 non-coding upstream 82145 33601918 ~ 33608105 (+)
G1540590 NA non-coding upstream 107503 33571633 ~ 33582747 (+)
G1540819 NA non-coding downstream 122895 33816173 ~ 33816464 (+)
G1540851 NA non-coding downstream 168961 33862239 ~ 33863152 (+)
G1540886 NA non-coding downstream 214953 33908231 ~ 33908628 (+)
G1540967 NA non-coding downstream 337590 34030868 ~ 34031208 (+)
G1540976 NA non-coding downstream 349855 34043133 ~ 34045680 (+)
G1540551 NA other upstream 199129 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 231826 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 630393 33058990 ~ 33059857 (+)
G1539641 NA other upstream 669706 33020228 ~ 33020544 (+)
G1540996 NA other downstream 385440 34078718 ~ 34079074 (+)
mbpa LOC106588233 other downstream 1190236 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1589325 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1681966 35373871 ~ 35386463 (+)

Expression


Co-expression Network