G1540976


Basic Information

Item Value
gene id G1540976
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34043133 ~ 34045680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763533
caatcttccaatgatatgcctacaaatacgtcacaatgctgctaagaccttgggcgaacgacagaaagtgtaggctcattccttgcgcaatcacagccatataaggagagaatggaaaacagagcttcagaaattctgctaattcctgggtgatgcatcatcttggtttcgcctgtagaatgagttctggggcacttacagacaaaatctttgcagattctgaaacttcagagtgttttctttccaaaactgcatagtcgagcatcttttcgtgacaaaatatcgcgcttaaaacgggaacgttttttatccaaaaatgaaatagcgcccctagagctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763533 True 339 lncRNA 0.42 2 34043133 34045680

Neighbor

gene id symbol gene type direction distance location
LOC110496043 LOC106588212 coding upstream 505564 33535229 ~ 33537569 (+)
LOC100136630 LOC106570065 coding upstream 530707 33508836 ~ 33512426 (+)
LOC110496056 dpy19l4 coding downstream 34428 34080108 ~ 34088560 (+)
ints8 ints8 coding downstream 46567 34092247 ~ 34116282 (+)
LOC110496058 LOC106588349 coding downstream 81512 34127192 ~ 34133734 (+)
trhrb LOC106588145 coding downstream 215632 34261312 ~ 34265470 (+)
LOC110496061 LOC106588154 coding downstream 251504 34297184 ~ 34300652 (+)
G1540967 NA non-coding upstream 11925 34030868 ~ 34031208 (+)
G1540886 NA non-coding upstream 134505 33908231 ~ 33908628 (+)
G1540851 NA non-coding upstream 179981 33862239 ~ 33863152 (+)
G1540819 NA non-coding upstream 226669 33816173 ~ 33816464 (+)
G1540729 NA non-coding upstream 349855 33690250 ~ 33693278 (+)
G1540994 NA non-coding downstream 29448 34075128 ~ 34075581 (+)
G1541243 NA non-coding downstream 75036 34120716 ~ 34120977 (+)
G1541268 NA non-coding downstream 79990 34125670 ~ 34125991 (+)
G1541270 NA non-coding downstream 80546 34126226 ~ 34126432 (+)
G1540551 NA other upstream 552012 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 584709 33455560 ~ 33458964 (+)
G1539671 LOC106582599 other upstream 983276 33058990 ~ 33059857 (+)
G1539641 NA other upstream 1022589 33020228 ~ 33020544 (+)
G1540996 NA other downstream 33038 34078718 ~ 34079074 (+)
mbpa LOC106588233 other downstream 837834 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1236923 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1329564 35373871 ~ 35386463 (+)

Expression


Co-expression Network