G1541344


Basic Information

Item Value
gene id G1541344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34178290 ~ 34178506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1763923
CAGTAAATTAATCatgcttaagccatgtttcagtcaggccaaacaaatcaagattatgatcagtgattagttcattgactataactgcctttgaagtgagggatctaacattaagtagccctattttgagatgtgaggtatcttTCAATAATGGTAGGAATGGAGGgggtctttattctagtgagattgctaaggcgaacaccgccatgtttagttt

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1763923 True 217 lncRNA 0.38 1 34178290 34178506

Neighbor

gene id symbol gene type direction distance location
LOC110496058 LOC106588349 coding upstream 44556 34127192 ~ 34133734 (+)
ints8 ints8 coding upstream 62008 34092247 ~ 34116282 (+)
LOC110496056 dpy19l4 coding upstream 89730 34080108 ~ 34088560 (+)
LOC110496055 LOC106588221 coding upstream 118330 33938682 ~ 34059960 (+)
LOC110496043 LOC106588212 coding upstream 640721 33535229 ~ 33537569 (+)
trhrb LOC106588145 coding downstream 82806 34261312 ~ 34265470 (+)
LOC110496061 LOC106588154 coding downstream 118678 34297184 ~ 34300652 (+)
pleca LOC100194709 coding downstream 197590 34376096 ~ 34579125 (+)
LOC110496064 NA coding downstream 296041 34474547 ~ 34482054 (+)
LOC110496065 LOC106588226 coding downstream 440048 34618554 ~ 34624236 (+)
G1541304 NA non-coding upstream 25978 34151433 ~ 34152312 (+)
G1541300 NA non-coding upstream 30444 34147598 ~ 34147846 (+)
G1541278 NA non-coding upstream 43484 34134122 ~ 34134806 (+)
G1541270 NA non-coding upstream 51858 34126226 ~ 34126432 (+)
G1541404 NA non-coding downstream 38776 34217282 ~ 34290422 (+)
G1541496 NA non-coding downstream 128344 34306850 ~ 34311736 (+)
G1541610 NA non-coding downstream 379121 34557627 ~ 34558111 (+)
G1540996 NA other upstream 99216 34078718 ~ 34079074 (+)
G1540551 NA other upstream 687169 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 719866 33455560 ~ 33458964 (+)
mbpa LOC106588233 other downstream 705008 34883492 ~ 34898413 (+)
G1541989 NA other downstream 1104097 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 1196738 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 1223331 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 1300329 35478835 ~ 35502933 (+)

Expression


Co-expression Network