G1542628


Basic Information

Item Value
gene id G1542628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34574753 ~ 34579122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765391
GTTGATGCCTCATAAGTTTATTTACATTCTGTTAGGTgttacattaaaatacaatgtCACCCTTTCAAAACGCCATTGTAAGCATGCTTGAAAACCCAACTTTAAAGTAAATCcttcaaacatttttaaaaggctTCACAACCAAAAATGTATTCTCAAATGGATACAACTATTTATATTTTCAACCAAGTTAAATGTCCTGCTTTAAATGACGTGcagcttataaaggcttcataaacactacatacATGTGTTACAAATCATCTACAAGcatatgtcatgctttataaagagttcataaatgtggcataactgtgtgacataatGGGTTATGTCTCACATGTGACATAACCCACGATGTCAAATATGACATAAACCTGTACTTTATAAACGATGGAATAAGCACAGCTTaaaaaaaggctttataaatcatATTAAATTGAAGGTTCACAAAGCATTTATAACCCTGTCATGCATcttggtagagcattgcagtGCCAGGAGAGTGGGTTCCTGAAAACACTCATACATAAAAATATATTCACGCATGACTGTGAGTCACTTTTGATAAAAGCGGCTGCtaaatttgatattattttaaaacatttctaggatGGCACAACTTCTTTCCCTCTTGTGTGCATAGTCAATATTGGACCAGACCTCAACTTTCCCCAAAATACTGTGCTGCAGGTTGACACACGTTGGTGAGGCATTTTAAAATCCATTTAGATTTTTTGCTTACTTATGTTTTGTTTTCCCAAATAAAATGTTCTCagttttgtttttccaggtttcaGATTTCCCCAATTGTTTCAGGTTCTCCCTCATTTTTTTCAAGTTTTTAATTGAAAAACTACAACATTTGATTTTCTGTCTTCACCACAAAGCTTAAGCCGCATTAGGGGATGACTTTTGAGGTATGTCAAAAATCTAAGAATCATATATTTTGAGTGTAGTTGCCCTTGAATTCAGTGCTCATGCCCTGCATTGTTGTTTGGTTAGAGGGCTTTTTGTTACGGAACAATCGCACATGTGATGATTATGTGCAGTGATTAGCATTATGACCACCAATGGAATGGGTGGAGTAAAAGGCCAGCAACACTCCGTACCGTACACTGTACAGTGATTCGCATTCCAAATTTAATACAAATGTCACCTATATATGAACATATATGAATCATTGTTAATGTTTAGACAACTATTTTTCATATCTCATGAATACAGATTATTGACACTTTTTATACTATGAATTCAATACATGACGTACTTTTATTTGGAAGAATTCCTAAATTCCGTGACCCGGAAGTATTTTTTTAGCGTTACCGACAAGATGCTGATCATGTGATGAGTTCGCAAATCAAAATGCCCAATTGTGGTGCCACTGGACAGTGATAAACAAGTTAACATTTATTCATTGTAATTTAAATGACTAGAGTTGAGTTAAATTCCATACTGTAGCTACCTCAGTCGTTATTTCAAATAATTTCGGTAGCTTCACAGCAATTGCTAGCTCGCCaaaatgttgctagctagcaggCTCAGCTAAATAAAAATCCTCTTAGATACAGACATGTCTCATAGTCATGTCATCACATTTGTACATTAAATAATAGAATCATACGAATCAAATGGAGTTTCCCATCTCCCCATTTTAGAGTTTATGGCGCTGCACAGAAAAACAGACATGCTAACTTTCTTTGTTGTTACTTTTAAGGTTGGAACCAACATGCAGTACCTCCAGCAGGCAGAGAGGCAAGAACCATTAATCCACTAGCTCAGGGACAGGCTACAATATTCACAGTTCTGTGTAATGTTCAATATAATTGCTTTGCTGGACTTTTTGAAACTTAATGTATTTGTCTTTACTGTTTATTTGTTTTAGCTTTTAGTGATCATTTCTTAAGTGTTAATACATTTGTGTTTACATCATTAAGCCTTTATGGGTCTGTTATGAATGACCATAGGTGTCTGACTTTATAGTCAGTACAGCTTCATATGATACAAGGCATTTATGCATGTGTTATAAATCACCAAAGGGGTCTGACTTAAGTACAGCGTCATGCAAAATAGAGTCTTTACAGGACTATGCAAGTATTACAGGACACTACAGTGTAAATAAATAGGTTATTAACGTTCGACTGAATTATGAAGGTTCTATCATGATCCAAAGGTTACTGTAGGGTGTAAGAGGTATTTAAATGGGCTGATGGACTTGCAAAGACCTGATGGGCCCAACAACGCACGGTATGGCttgttttgtgtgtgcgtgtactgAGGAACATGTAACTTGGCGCCAGAAGACAGTCATTTTCAATGTttttaggttgggggctttcataaAGGTCAGTGTTTCTTGGTGTAATGTCGTCCCTAGACTATTGAACACACCACACATTTAAGCCTGTGATATCAGCCATTCAAAGCTGGCCTTAGTGGAGTGACCATAGAATTCTATAGGAGTGACCTTCCAGAATAAAGTACTTGTCATCatcactagttaacacagttaAAAAGTCATAATTATTGCTAAACCCTGCCCATTTCCACAATTGATCTTCTTAAAAtgagattttaaacctaaccctaactaatgaAGGCCAAGTTTAATGTGTTGGTCAAGCAGACATTCCGCATATTTGGGCGGATGTGTCTGGGAATGAGATTAGGTGTATTGTGACTAACATGACTTCACTTTAGAGCGTATTCCAATCCCTTGACCCAACATGTCTCCCTTTATAAAGCACATGTTGCTATCATATTCCACATAGagggttatgtcacatttgacatggGTGATTATGACACATTTATGAACCATTTACAAAGCATGACATACGGTCATAGATACTTTGTAACAcatttatgtagtgcttatgaaggctttatgaagccttCATAAGATAAGCTGAATGTCATTTAAAGGGGGATCAAACATGCAAAGCAATAATAAAATATGTATGACAATATTATggaaatttagatttttttttacaaaggaaagcacttttaaggaacaataaaacaaacaattgtggtggaaaatatgAACACTGGTTTAGGAGGCAACAAGTGATTAAGCTTAAAGATATTTTTCAAAtttacactgactgtacaaaacattaggaacatctacTCTTTCCAtgataaactgaccaggtgacaggtgaaagctacgatcccttattgatgtcacctgttaaatccacttaaatctgtgtagatgaaggggaggagacaggttaaaggagtattttttagccttgagacaattgagacatggattttgtgtgccattcagagagtgaatgggcaagacaaaatatttacctGCTTTTGAACatggtatggtagcaggtgccagtttgagtgtgtcaagaactgcaaccctgctgggtttttcacgctcaacagtttcccatgtgtatcaagaatggtccaccacccaaaagataTCCAGctgacttgacacaactgtgggaagcattaagagtcaacatgggtcagcatcactgtggaacgctttcaacaccttgtagtccatgccccgacgaaatgaggctgttctgagggcaaaatggggtgcaactcaatattaggaaggtgtgcataatgttttgtacattcagtgtataatacagtgtacagtacatagcttgtcagtacatttcaaatgttataattATTTTTAGCtctaaacatttatttaaatattaGCCCTGTACAAATGTTCTTAGTTGTATTATATAGAAATAAAAGGGTTTTGATGCGGTATGAATACTGTATGATGCATAAATTGTGTCATGAACTTGGGAAATacctgataataatgataatatataATTTGAACTATGGTAACTGTGTCAGTTTTTTTCTCCAGTTGTGAATCACTCAATTTACAGTACAATTCACACCTTGTAATCGACGCAACCCTTTGATGCATTGAATATGCAGGCACTTACAAAAACATTTCAATACAGCAATTGTGGTTTGTGTGGAGGTGGTTAAGACTGTTACTGAGATCAGGTGGAGGTGAGCAGGCCGAGGGTCAAAGTGAGACGCAAGGTTGAAGACGGTCAAAGCAGTGATTCATTCTATTTTGCTCAGTTAACAACATCTTCCTTTATTTTTTGAATAAATGGCAGAAAAATAAAAAGTCTAAAACAAATGATGGACATGTATGTCGGTGCAGTCTTGAACATTGCCGGTGATCTTCTTTTTGACTTGAGGTTCTCAGGATATTGGAAGACATCAAAGCATCAGcacacagaggaggagtagagataG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765391 True 4287 lncRNA 0.37 2 34574753 34579122

Neighbor

gene id symbol gene type direction distance location
LOC118940975 LOC106611608 coding downstream 337187 34235388 ~ 34237566 (-)
gdf6b gdf6 coding downstream 390862 34179033 ~ 34183891 (-)
lrp12 lrp12 coding downstream 707322 33828341 ~ 33867431 (-)
vps72a vps72 coding downstream 761452 33783934 ~ 33813301 (-)
LOC110496051 LOC106588219 coding downstream 827968 33697163 ~ 33746785 (-)
fbxl6 fbxl6 coding upstream 16109 34595231 ~ 34619367 (-)
nfatc1 LOC106588230 coding upstream 65994 34645116 ~ 34704821 (-)
atp9b atp9b coding upstream 158705 34735374 ~ 34794929 (-)
sall3b LOC106588232 coding upstream 216272 34795394 ~ 34808500 (-)
zbtb22a LOC106588234 coding upstream 328001 34906715 ~ 34923956 (-)
G1542587 NA non-coding downstream 103824 34429026 ~ 34470929 (-)
G1542585 NA non-coding downstream 147357 34427176 ~ 34427396 (-)
G1542584 NA non-coding downstream 148041 34426495 ~ 34426712 (-)
G1542583 NA non-coding downstream 148584 34425948 ~ 34426169 (-)
G1542574 NA non-coding downstream 162310 34412171 ~ 34412443 (-)
G1542698 NA non-coding upstream 6708 34585830 ~ 34586069 (-)
G1542701 NA non-coding upstream 9645 34588767 ~ 34589016 (-)
G1542702 NA non-coding upstream 9964 34589086 ~ 34589447 (-)
G1542706 NA non-coding upstream 12257 34591379 ~ 34591585 (-)
G1542714 NA non-coding upstream 45862 34624984 ~ 34625603 (-)
G1541318 NA other downstream 412295 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 900522 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 963860 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1183001 33391339 ~ 33391752 (-)
G1540148 NA other downstream 1638184 32899578 ~ 32936569 (-)
G1542988 sast other upstream 558515 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 596184 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 767773 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 873496 35452618 ~ 35504157 (-)

Expression


Co-expression Network