G1542719 (LOC106588229)


Basic Information

Item Value
gene id G1542719
gene name LOC106588229
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34635809 ~ 34636868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765488
TGTTGGGAAAAACATGGCAATGAAGCAGGCTAGAGGGTTGGACACCGCAGCCATGGTGGCTGATAAGTGGTAGGCACTGTTTCCATAGGGCAGACAAGAGTAGGACTGCACTGAGGGAAGCACAACGTTAGTCAGTCCGTTGACCCAGGCCAGGATGAAGAACATATACAGCACCTGTATCCGGCTGTACGTCCCGGTCCCAAAGCAGCTTTTGGGCTTGATATCAGACTGTTTGATCATGGTCTTCTGCTCTGTGGGGTTCATCTGAGCTGCCTCGCCTTTCTCCAGGACCCCGTTGGGGTAGCGGGCATTTGGGCGTTCCCGGGCCACGGCAGGGTGGTAGTTCAGAAGGATGAAGGCTCCCAGGCACACCAACATCATGGCACTGAGGAAGAAGAAGAACACCCCAGCTGAGAAGTTGGCCGGCTGGTAGTGAGCCTGAAGTTCGTAGCTAAGACTGACTGAGCCAGTGTCATTTATCATCCGAGTGCAGTTGTTACAGTGGACCACCCCCACCCCCTGGATCAGGGCTACCAGGGCGGGTAGCAGGCCACTGACACCCTCCCCTACAAAGTAGGTGGTGAGGTACTGAGGCTTCAGACGCATCATAAAGGGCAGGAAGGTGACAGAGGAGGTGCAGTCCACAGTGGAGAGGAAGAaagtaaggaggaggagggccacgCTGCGAGGGACGCCCACCACCAGCAGCGTCTCCTTCCAGAAGAAGGCCAGGAGAAAGCTGGCCACCATGCCCAGGGAGATGATCACATAGATAACCACTGTCTCGTTTAGCGCCCCGGGGCGGAAGCGGTGCATGAGGGTGATGAACAGGGGCCCCACGTTGGCCATCTGGATGAGGACGGATAGGTAGGATGGCAGGTACCAACCCTCTGGGATCTGGGGCACGATGAGAGGCAGCTCTACCCATAGTCCGTTGATAGACACCCAGGAGCCCATGCCAAACAGGCAGGCCAATATATGGATGAAAAGTGACATTGTGAATCTGGGTACTGAACACTGGTGCGCTCAGAAGTGGATTCTAGAATGAGATAGAAATAAG

Function

NR:

description
riboflavin transporter 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765488 True 1060 lncRNA 0.55 1 34635809 34636868

Neighbor

gene id symbol gene type direction distance location
fbxl6 fbxl6 coding downstream 16442 34595231 ~ 34619367 (-)
LOC118940975 LOC106611608 coding downstream 398243 34235388 ~ 34237566 (-)
gdf6b gdf6 coding downstream 451918 34179033 ~ 34183891 (-)
lrp12 lrp12 coding downstream 768378 33828341 ~ 33867431 (-)
vps72a vps72 coding downstream 822508 33783934 ~ 33813301 (-)
nfatc1 LOC106588230 coding upstream 8248 34645116 ~ 34704821 (-)
atp9b atp9b coding upstream 100959 34735374 ~ 34794929 (-)
sall3b LOC106588232 coding upstream 158526 34795394 ~ 34808500 (-)
zbtb22a LOC106588234 coding upstream 270255 34906715 ~ 34923956 (-)
LOC110496076 LOC106588236 coding upstream 297740 34933039 ~ 34943891 (-)
G1542718 NA non-coding downstream 905 34634476 ~ 34634904 (-)
G1542717 NA non-coding downstream 1601 34633337 ~ 34634208 (-)
G1542714 NA non-coding downstream 10206 34624984 ~ 34625603 (-)
G1542706 NA non-coding downstream 44224 34591379 ~ 34591585 (-)
G1542702 NA non-coding downstream 46362 34589086 ~ 34589447 (-)
G1542721 NA non-coding upstream 4945 34641813 ~ 34642229 (-)
G1542729 NA non-coding upstream 28374 34665242 ~ 34665496 (-)
G1542731 NA non-coding upstream 31898 34668766 ~ 34668987 (-)
G1542753 NA non-coding upstream 106755 34743623 ~ 34744146 (-)
G1541318 NA other downstream 473351 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 961578 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1024916 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1244057 33391339 ~ 33391752 (-)
G1540148 NA other downstream 1699240 32899578 ~ 32936569 (-)
G1542988 sast other upstream 500769 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 538438 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 710027 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 815750 35452618 ~ 35504157 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021926 NA coding CM030130.1 CM030130.1 39420257 ~ 39423376 (-)