G1541697 (atp9b)


Basic Information

Item Value
gene id G1541697
gene name atp9b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34713839 ~ 34739528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764299
ctgaacgacgacacggataatatagagctggctggtttttccgtgcatcggcaggacagagcagctatgtCTGgtAAACAACATTTGCTTACCGAAGTACTCATTGAGGAAGGCAAGCGAGGCTATGTAGCAGCCCAGACTGAGGAACTCTGCTAGCACCATGAGCCAGTGCCAGGTACGGATGTTGAGCGCCACCATGAGCAGCTCGGTGAGGATCAGCGCAGTGAAGGAGATGGCCACCACGTGCACAAACTCAGACTCAAACAACACCAGTGCGCCGTACATCAGGATGCCACC

Function

symbol description
atp9b Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in endocytosis; phospholipid translocation; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within phospholipid transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human ATP9B (ATPase phospholipid transporting 9B (putative)).

NR:

description
PREDICTED: probable phospholipid-transporting ATPase IIB isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764299 True 297 lncRNA 0.54 2 34713839 34739528

Neighbor

gene id symbol gene type direction distance location
LOC110496067 LOC106588229 coding upstream 73882 34633226 ~ 34640621 (+)
LOC110496068 slc52a2 coding upstream 80882 34627456 ~ 34632957 (+)
LOC110496065 LOC106588226 coding upstream 89603 34618554 ~ 34624236 (+)
pleca LOC100194709 coding upstream 138902 34376096 ~ 34579125 (+)
mbpa LOC106588233 coding downstream 143964 34883492 ~ 34898413 (+)
LOC110496074 NA coding downstream 179009 34918537 ~ 34921751 (+)
LOC110496075 LOC106588237 coding downstream 219895 34959423 ~ 34986188 (+)
olah sast coding downstream 392233 35131761 ~ 35139834 (+)
LOC110496082 LOC106588242 coding downstream 504669 35237754 ~ 35324664 (+)
G1541666 NA non-coding upstream 43342 34670262 ~ 34670497 (+)
G1541644 NA non-coding upstream 70551 34643058 ~ 34643288 (+)
G1541643 NA non-coding upstream 86865 34626477 ~ 34626974 (+)
G1541696 NA non-coding downstream 1947 34741475 ~ 34743381 (+)
G1541713 atp9b non-coding downstream 9408 34748936 ~ 34750497 (+)
G1541721 NA non-coding downstream 39393 34778921 ~ 34780838 (+)
G1541720 atp9b non-coding downstream 42624 34782152 ~ 34792158 (+)
G1541793 NA non-coding downstream 133165 34872693 ~ 34872915 (+)
LOC110496058 LOC106588349 other upstream 584180 34127192 ~ 34133734 (+)
G1540996 NA other upstream 634765 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1176275 33535229 ~ 33537569 (+)
G1540551 NA other upstream 1222718 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 1255415 33455560 ~ 33458964 (+)
G1541989 NA other downstream 543075 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 635716 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 662309 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 739307 35478835 ~ 35502933 (+)

Expression


Co-expression Network