G1542753



Basic Information


Item Value
gene id G1542753
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34743623 ~ 34744146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1765524
CTAACACACAGGGGAGGGTGCTTCTAAACATGATGGACATTATGAAGATGATGGATACTAACACACAGGGGAGGGTGCTTCTAAACATGATGGACATTATGAAGATGATGGATATTAACACACAGGGGAGGGTGCTTCTAAACATGATGGACATTATAAAGATGATGGATACTAACACACAGGGGAGGGTGCTTCTAAAACATGATGGACATTATGAAGATGATGGATACTAACACACAGGGGAGGGTGCTTCTAAACATGATGGACATTATGAAGATGATGGATACTAACACACAGGGGAGGGTGCTTCTAAACATGATGGATATTATGAAGATGATGGATACTAACACACAGGGGAGGGTGCTTCTAAAACATGATGGACATTATGAAGATGATGGATACTAACACACAGGGGAGGGTGCTTCtaaacatGATGGATATTATGAAGATGATGGATATTAACACAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1765524 True 467 lncRNA 0.41 2 34743623 34744146

Neighbor


gene id symbol gene type direction distance location
nfatc1 LOC106588230 coding downstream 38802 34645116 ~ 34704821 (-)
fbxl6 fbxl6 coding downstream 124256 34595231 ~ 34619367 (-)
LOC118940975 LOC106611608 coding downstream 506057 34235388 ~ 34237566 (-)
gdf6b gdf6 coding downstream 559732 34179033 ~ 34183891 (-)
lrp12 lrp12 coding downstream 876192 33828341 ~ 33867431 (-)
sall3b LOC106588232 coding upstream 51248 34795394 ~ 34808500 (-)
zbtb22a LOC106588234 coding upstream 162977 34906715 ~ 34923956 (-)
LOC110496076 LOC106588236 coding upstream 190462 34933039 ~ 34943891 (-)
LOC110496078 LOC106588238 coding upstream 253326 34997472 ~ 34999239 (-)
LOC110496079 LOC106588239 coding upstream 267864 35012010 ~ 35016157 (-)
G1542731 NA non-coding downstream 74636 34668766 ~ 34668987 (-)
G1542729 NA non-coding downstream 78127 34665242 ~ 34665496 (-)
G1542721 NA non-coding downstream 101394 34641813 ~ 34642229 (-)
G1542719 LOC106588229 non-coding downstream 106755 34635809 ~ 34636868 (-)
G1542857 NA non-coding upstream 155162 34899308 ~ 34899566 (-)
G1542864 NA non-coding upstream 156001 34900147 ~ 34900382 (-)
G1542865 NA non-coding upstream 156255 34900401 ~ 34900639 (-)
G1542867 NA non-coding upstream 159997 34904143 ~ 34904354 (-)
G1542869 NA non-coding upstream 160891 34905037 ~ 34905317 (-)
atp9b atp9b other downstream 3984 34735374 ~ 34794929 (-)
G1541318 NA other downstream 581165 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1069392 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1132730 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1351871 33391339 ~ 33391752 (-)
G1542988 sast other upstream 393491 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 431160 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 602749 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 708472 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 751176 35492995 ~ 35499681 (-)

Expression



Co-expression Network