G1541720 (atp9b)


Basic Information

Item Value
gene id G1541720
gene name atp9b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34782152 ~ 34792158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764326
aacacatacagtacagacactaCCTTACTCTCTTCTATTATCCCAACCCCCTTAAAAACTGTATCAAgttgggggctcccgagtggcgcggcggtctaaggcactgtatctcagtgctagatgcggcactacagatcctggttcgattccaggctgtatcacaaccggccgtgactgggagtcccatagggcggcgcacaattggcccagtgtcgctAGGGTTGGCCGGGGAAGccatttattgtaaataagaatttttccttaactgacttgcctagtaaataaAGGTGCAAAAGCTCCATTTCAGTTGTGTGACCTGTCGCCGATCTTACTGCAGCCCACTCCCCTTGTGGAATAGAATTGATTGTAAACATTAAATTATTCAGCCAGGCTGCCTCTATGCACCAGGTACCCTCAGTTATGCTCACATAGTGCTCTCTGGGTGAGAACATGCAGGGAGGGGAAGATTATCTTACTCAGCCCCAGTGTAGAGCTGTTGCCAGTAGATGCCTCCCATGGATGAAATACAGACTCTCTAGAGCCAGACACAATAGAGGCAGAATGTCACTTTCTGAGACACAGTTGCAGCAAGTGTCTTACCACAGACTAACTGTCTCATCAAGATAGGAAATGAAAAAGGAAATGAATGGGGTTCCGAATCAAACGTTCAAATAAATAACTTGCTTATGTGGACAAGAGAGTTTTATGAGAAAAGTGTATCTGAAGTTAGAATTTGTAACCTCGATTAGTAATCTGGTCAAATAGCGATACTGAATTATGTTGTTTTCCCGCTCTGTCCAACATAATTTCAATTCACTCTCAAGTGTTATTGGGTGAAAGGTTATCCCTGTATAAAGATCATTCAATCATAACACATGGGACATATAACTAATAAAATAGAACCAATCAGCTCAATAGACCTCATCAAATTGACAGAATATGATTTGGTTAACAACTGTATGGATCTTCTCAAAAGCTTGTCACAATTCACTGAACGTTAAAATGACCCCACAGCCTTCTAAAAATTATCCTGTTACAATAAGTAGGGAGGATGGGTTTAATTGGGGTAAAAAGTAATAAAGTGATTGCCATCCCCCATCGACTGGAAACCTTATATGGTAATGAAATCGCCCAGTTGACTTGCTGAAACTTGAATTATGTGGTCACATTAAGTAGtgacagaaaaacaaacataaatCTGAAGTGTTTAGTATCATCTCATCGTAGAGAAAGAAGGTACTGTGTTCTATGGCATTCTGGCTATCATGAGGATAAGGTTTCCATGCCTCATTAAAAACAACCTAATACTGACAATGTTTTTAATAACACAAAATATAATCACTGAATATAACATGACATTTATCAGTTATATTAGTCACATACTGAGAACAGGTCATGTACATACCCCAAGAGCAGGTAGTCTTTGTGTGCAAACAACAGCAACTTTCAACTTCcagtctgtctctccatctaatTGGTCCGTCCTGATGAAACATGAACCAGTCTTCTCTGATGTCCTTAGAAATATCATATCTGCAGGGATCCTTTGGTTCTTTTCAACTATGATGAGGTCTCCAACTTGTATGTCAGAACTCTTCAATTGAACTTTACCTCGCACTGTGAGCTTGCTGTAGAGCTGGGAGTTCATCTCCTTGTCCCGCTGGTACCGTCGGACCTCGTCCACAGCCTCACGTACCATTGTAacagccatcacaaagccCAGAGGTGCCCAGTAGGTGTACAAGTACCCTATTTTTAGGGATGGCACGAACTGGGAGCAGGCCACCACTAGAAAGTACAGGTTGAGGAAGAACTTGAACTGCTGGTAGAGAACCCCAGGCACAAAGGTGAAGAAGTTGTACTTCTGGTTTTTAATGGCGTTCTTGGGGTACTTCTCCTCACACTTCTCCGGGTGGCCCAGCCACACTGTCCGGGCTTTCAGCTCCTTCGTCCTCCGACACATACGAGCCAAGCAGTCACAGCAGCTGCCACAGAGGATCTTCCAGCCTCCCATGAGGAGCCACCCCaggcctctctgtctctggttgGCCCTGGCCCGAGGCAGGGTGTGGTAGTCACTCTCATCATTCTCAAAACCTTCCTCAGACATCATCAGGGGCATCTCGTCCAAGTTAGAG

Function

symbol description
atp9b Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in endocytosis; phospholipid translocation; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within phospholipid transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human ATP9B (ATPase phospholipid transporting 9B (putative)).

NR:

description
probable phospholipid-transporting ATPase IIB isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764326 True 2138 lncRNA 0.44 7 34782152 34792158

Neighbor

gene id symbol gene type direction distance location
LOC110496067 LOC106588229 coding upstream 142195 34633226 ~ 34640621 (+)
LOC110496068 slc52a2 coding upstream 149195 34627456 ~ 34632957 (+)
LOC110496065 LOC106588226 coding upstream 157916 34618554 ~ 34624236 (+)
pleca LOC100194709 coding upstream 207215 34376096 ~ 34579125 (+)
mbpa LOC106588233 coding downstream 91334 34883492 ~ 34898413 (+)
LOC110496074 NA coding downstream 126379 34918537 ~ 34921751 (+)
LOC110496075 LOC106588237 coding downstream 167265 34959423 ~ 34986188 (+)
olah sast coding downstream 339603 35131761 ~ 35139834 (+)
LOC110496082 LOC106588242 coding downstream 452039 35237754 ~ 35324664 (+)
G1541721 NA non-coding upstream 1314 34778921 ~ 34780838 (+)
G1541713 atp9b non-coding upstream 31655 34748936 ~ 34750497 (+)
G1541696 NA non-coding upstream 38771 34741475 ~ 34743381 (+)
G1541697 atp9b non-coding upstream 42624 34713839 ~ 34739528 (+)
G1541694 NA non-coding upstream 43717 34735386 ~ 34738435 (+)
G1541793 NA non-coding downstream 80535 34872693 ~ 34872915 (+)
G1541808 NA non-coding downstream 113769 34905927 ~ 34906162 (+)
G1541827 NA non-coding downstream 137365 34929523 ~ 34929843 (+)
G1541828 NA non-coding downstream 137821 34929979 ~ 34930187 (+)
G1541815 NA non-coding downstream 175832 34967990 ~ 34968339 (+)
LOC110496058 LOC106588349 other upstream 652493 34127192 ~ 34133734 (+)
G1540996 NA other upstream 703078 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1244588 33535229 ~ 33537569 (+)
G1540551 NA other upstream 1291031 33489337 ~ 33491121 (+)
LOC110496797 LOC106570068 other upstream 1323728 33455560 ~ 33458964 (+)
G1541989 NA other downstream 490445 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 583086 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 609679 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 686677 35478835 ~ 35502933 (+)

Expression


Co-expression Network