G1542864


Basic Information

Item Value
gene id G1542864
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34900147 ~ 34900382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765646
gcattgaaggtccacaagaacacattggcctccatcattcttaaatggaagaagtttggaaccaccaagactcttcctagagctggaagcctggccaaactgagcaatcagaggagaagagccttggtcagggaggtgaccaagaacccgatggtccctctgacagagctccagagttcctctgtggagatggaagaaccttccagaaggacatccatctctgcagcactccacca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765646 True 236 lncRNA 0.51 1 34900147 34900382

Neighbor

gene id symbol gene type direction distance location
sall3b LOC106588232 coding downstream 91647 34795394 ~ 34808500 (-)
atp9b atp9b coding downstream 105218 34735374 ~ 34794929 (-)
nfatc1 LOC106588230 coding downstream 195326 34645116 ~ 34704821 (-)
fbxl6 fbxl6 coding downstream 280780 34595231 ~ 34619367 (-)
LOC118940975 LOC106611608 coding downstream 662581 34235388 ~ 34237566 (-)
zbtb22a LOC106588234 coding upstream 6741 34906715 ~ 34923956 (-)
LOC110496076 LOC106588236 coding upstream 34226 34933039 ~ 34943891 (-)
LOC110496078 LOC106588238 coding upstream 97090 34997472 ~ 34999239 (-)
LOC110496079 LOC106588239 coding upstream 111628 35012010 ~ 35016157 (-)
LOC110496800 LOC106588240 coding upstream 116596 35016978 ~ 35018421 (-)
G1542857 NA non-coding downstream 581 34899308 ~ 34899566 (-)
G1542753 NA non-coding downstream 156001 34743623 ~ 34744146 (-)
G1542731 NA non-coding downstream 231160 34668766 ~ 34668987 (-)
G1542729 NA non-coding downstream 234651 34665242 ~ 34665496 (-)
G1542865 NA non-coding upstream 19 34900401 ~ 34900639 (-)
G1542867 NA non-coding upstream 3761 34904143 ~ 34904354 (-)
G1542869 NA non-coding upstream 4655 34905037 ~ 34905317 (-)
G1542881 NA non-coding upstream 25341 34925723 ~ 34925946 (-)
G1541318 NA other downstream 737689 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1225916 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1289254 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1508395 33391339 ~ 33391752 (-)
G1542988 sast other upstream 237255 35137637 ~ 35138554 (-)
LOC110496081 LOC106588241 other upstream 274924 35151351 ~ 35203984 (-)
LOC110496085 NA other upstream 446513 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 552236 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 594940 35492995 ~ 35499681 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G570 NA non-coding NC_047595.1 CM018541.1 788612 ~ 788813 (-)