G1541827


Basic Information

Item Value
gene id G1541827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34929523 ~ 34929843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764439
taactaactttgtccttccggatagcctgagtgcacttatttctcatttgcctgaacgagaacCAGTCAGCATGAGTATGCTTGTGCCGAGCCTTTAGCCAAATGCAACTCTTGAGGttgagtaactctgcaagatcacggtcgaaccaggggcagAACCTGTTTTAATTCTCTTTTTTTATGGGGTGTGTTTGTTGACAATATCACTcgaaatatcaaaaaagaaggtgGGGATCAAGCTGATACCATCTTACAGAGGCCAGTTGACGAAGGAAGGTTTGCTCATTAAACTTTTTTAGCAAGGAAAATgctcaattcaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC109204916

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764439 True 321 lncRNA 0.42 1 34929523 34929843

Neighbor

gene id symbol gene type direction distance location
LOC110496074 NA coding upstream 7772 34918537 ~ 34921751 (+)
mbpa LOC106588233 coding upstream 31110 34883492 ~ 34898413 (+)
LOC110496067 LOC106588229 coding upstream 289566 34633226 ~ 34640621 (+)
LOC110496068 slc52a2 coding upstream 296566 34627456 ~ 34632957 (+)
LOC110496065 LOC106588226 coding upstream 305287 34618554 ~ 34624236 (+)
LOC110496075 LOC106588237 coding downstream 29580 34959423 ~ 34986188 (+)
olah sast coding downstream 201918 35131761 ~ 35139834 (+)
LOC110496082 LOC106588242 coding downstream 314354 35237754 ~ 35324664 (+)
tomm40l LOC106588243 coding downstream 405205 35335048 ~ 35348295 (+)
LOC118941149 NA coding downstream 482928 35412771 ~ 35433941 (+)
G1541808 NA non-coding upstream 23361 34905927 ~ 34906162 (+)
G1541793 NA non-coding upstream 56608 34872693 ~ 34872915 (+)
G1541720 atp9b non-coding upstream 137365 34782152 ~ 34792158 (+)
G1541721 NA non-coding upstream 148685 34778921 ~ 34780838 (+)
G1541713 atp9b non-coding upstream 179026 34748936 ~ 34750497 (+)
G1541828 NA non-coding downstream 136 34929979 ~ 34930187 (+)
G1541815 NA non-coding downstream 38147 34967990 ~ 34968339 (+)
G1541811 NA non-coding downstream 38803 34968646 ~ 34969595 (+)
G1541809 NA non-coding downstream 42351 34972194 ~ 34972923 (+)
G1541933 NA non-coding downstream 220835 35150678 ~ 35151223 (+)
LOC110496058 LOC106588349 other upstream 799864 34127192 ~ 34133734 (+)
G1540996 NA other upstream 850449 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1391959 33535229 ~ 33537569 (+)
G1540551 NA other upstream 1438402 33489337 ~ 33491121 (+)
G1541989 NA other downstream 352760 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 445401 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 471994 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 548992 35478835 ~ 35502933 (+)
G1542090 NA other downstream 599700 35529543 ~ 35606179 (+)

Expression


Co-expression Network