G1542905 (LOC106600457)


Basic Information

Item Value
gene id G1542905
gene name LOC106600457
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34956665 ~ 34957490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765687
acctagaatacctcacaattaaATGGagaccatattatctcccaagagaattttCCTCCGTCATTGCCATGGCCGTTTACATCCCACCTGAAGCTGATCACTCAACGGCCCTCAAAGCGCTTCACTGGACTTGAAACCACGTATCCCGATGTTCAtatattgtagctggggattttaacaaagcaaatctgaGGATTAGGCTGCCAAAGTTCTATCAACAAATCGATTGTACTACTCGCGCTGCTAAGACTGTCGACCATTGCTATTCAAACTTCCAGAATGCTTACAAGGCCCTACCTGCCCtacttttggcaaatctgaccacgactccatcttgctcctcccgtcctatagacagaaactcaaacaggaagtacccgtgcttcGAAcaattcaatgctggtctgaccaatcggaatccacgcttcagtATTTttttgatcacatggactgggatatgttacGGGTAGCTGAAAATAATCTGGATGCATACACGGATacagtgagtgagtttataaggaagtgtataggagatgtagttcccactgtgactattaaaacctaccctaaccagaagccgtggatagatggtagcatttgcgcgaaactgaaagcgtgaaccaccgcatttaacaatAGCGAGGTGACTGGTAATATagcagaatataaacagtgtagttattcactccgcaaggcaatcaaacaagctaaacgtcagtatagagatgaagtggagtcgcaattcaacggctcagatacgatgtggcagggactacagacaatcacggactacaaaaggaataCCAGCCACATTGCCGAGACCGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765687 True 826 lncRNA 0.45 1 34956665 34957490

Neighbor

gene id symbol gene type direction distance location
LOC110496076 LOC106588236 coding downstream 12774 34933039 ~ 34943891 (-)
zbtb22a LOC106588234 coding downstream 32709 34906715 ~ 34923956 (-)
sall3b LOC106588232 coding downstream 148165 34795394 ~ 34808500 (-)
atp9b atp9b coding downstream 161736 34735374 ~ 34794929 (-)
nfatc1 LOC106588230 coding downstream 251844 34645116 ~ 34704821 (-)
LOC110496078 LOC106588238 coding upstream 39982 34997472 ~ 34999239 (-)
LOC110496079 LOC106588239 coding upstream 54520 35012010 ~ 35016157 (-)
LOC110496800 LOC106588240 coding upstream 59488 35016978 ~ 35018421 (-)
ago3b i2c3 coding upstream 93905 35051395 ~ 35093817 (-)
LOC110496081 LOC106588241 coding upstream 193861 35151351 ~ 35203984 (-)
G1542904 NA non-coding downstream 168 34956285 ~ 34956497 (-)
G1542903 NA non-coding downstream 883 34955532 ~ 34955782 (-)
G1542902 NA non-coding downstream 1404 34955054 ~ 34955261 (-)
G1542899 NA non-coding downstream 2793 34953662 ~ 34953872 (-)
G1542893 NA non-coding downstream 9987 34946448 ~ 34946678 (-)
G1542906 NA non-coding upstream 624 34958114 ~ 34958387 (-)
G1542848 NA non-coding upstream 6870 34964360 ~ 34967877 (-)
G1542851 NA non-coding upstream 10500 34967990 ~ 34968548 (-)
G1542847 NA non-coding upstream 11153 34968643 ~ 34969518 (-)
G1542912 NA non-coding upstream 14725 34972215 ~ 34973095 (-)
G1541318 NA other downstream 794207 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1282434 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1345772 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1564913 33391339 ~ 33391752 (-)
G1542988 sast other upstream 180147 35137637 ~ 35138554 (-)
LOC110496085 NA other upstream 389405 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 495128 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 537832 35492995 ~ 35499681 (-)

Expression


Co-expression Network