G1542848


Basic Information

Item Value
gene id G1542848
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34964360 ~ 34967877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765630
ctttaaaatgataaacctggattaggtaacacaagtgaccccaaacttttgaacggtggtgtacaTGTAGAGTGATTCTTTTCGATTGTGTCCCATTGAAGCACACTGGCTGATGGAAAAAATTATAATGTAGTATTTACAGCCATATCCATATATGGTTTGTTTTACCTTCCACCATAAATTGATGTCAAATTGATACATTTGAAATATCATTTTTCAGTGTTCATAATTGTGGTTCAGTATTTATCAGTTTTGAGCAGTATGATTAAGTGAATTGTGTTGTTAACAAATGACAAGAAAATCAACAGCAAAGTGAACATTGCATTTTGAAAAACAGTTACTTAGATTGAACATGTATACAAATTGAAAGAGTGATTTGGTGCAGCGAACTTGTGACTTTGAATTTGTTTGTTGTACTCAGTCAATGGGAAATGTGCTTAGAGTTTTGAAACATTATTTTTGTGAttagagttgtgaaaatgtaccacatacttgtgaaaattgcaCCCAAGTCATTGggagaaaaaaaactgaaatacagtGTGTGATAAAGTTATCTTGATAGCCATTCAATCAGATTAATTCTCTCACAATACCTCTTAATATAAATGTACATACACTTGGATCATTACAACAGAAAAAAATACCTTGATGCACGACACACAATGATTAATTATTTGAATTAGAAACATGCTTTTGTGTGTAAGCACCCCTGAAAAACCATAATCAAAAAAAGAATATATATGTTTCTCACAAAAGTAGTGTGTATTAGCTGACTGATATCCACCTCATTTTTGAAAACTTTTAAAACACAGAAGCCAAATGCCTAAACTATGGATACAACTTCCTCCATGCTCATGCATGATCACAATTCATATGTGCACCACTAGAAATCCCTGCATTTAATAGTAGGTTTCTGTTAGCTGATACATAATGACAAAATACACCATATTACTGTCCTGTGTGGACTTTTTAGGCTAAACTGCATTGGAAAAAAGCATAACTGATCCAGATGGTTGCCCAATCAGGCAACCTAGATGCGCTTATTTCAAAATGAATATGCATTCTAAATGCCAGGTTTTGAGTGGTTATTCAAATGACAGGCTATTCACTGCCGTTTACAGCCTAGACTAGAGTTtgtactcacttgaaaacaataaCATTCTTcattacattgtgttgttgtagCCTATGTAGGATGCATTGCTTGTCCCTACAAAACTGAAACAATAGGGTATATTTTCGAGCATCATACCTGGGTACTGGGAGGGAGCGCGCACATATTGTAAACTACCTATGCTTTATTTTAATGATACACTTTTTTTCCCCTTTGACTGGATATATGCACTGCAGTATTAAGCCTAACATTGGTCTTGTGAATTATGGTCGAATATGCATACGCTTCTAATTTAGGCTATATGGTACATGTCgagcctgtctgtcttcattgTTCTGTTGCGAAATTATGCATCTGGCCTCTCCGCTGTCACGGCTATTCCTTTTAAATTCCCAGTAAAAGCcaaaagcttgttggacacttgTTTCAACTTATTTTCATTAGCCTACTAATAGCCCGTTGGAGTTTAGATGCATGCTTGCTCTTGCTTGCTGAATGTAAAATATGCTATAGCATTAACGGGCGGGGAGATGGAAAAGAGCAGTCCATATTTATAGTAGGCTACTCCTATCTTAACACCGGGCTACATCCTGACAAAATAGGTCTACACCATATGAGTGACCTGCTAATGTATCTTTCTGGACCTTATACACTGTTGAGGATAGACCCAAATGGATCCAAAATTGTTGTATAATCAGGCCCACGCTGTTGACCTATGCAGTTATTTCGGGATGTGTGCGCAGTTATTCAGATTAGCCTACATTACTGCAGTTTACAGCCCACGGACAATAGTTTCGTATTCACTGAATAACAATAATTCATTCCTCATTGCACTGCGTTGTTGTAGGCCAGGTATAATTATTTTATTGGCTTAAAAACGTAGGCCTGGGACTAATCAATAGTGGAGCTTTGCGTGCCTGGGGACAACGGAGCGCAGCCTGCTGGAACGCACTACACATCTATCTGCCCACTACAGATCTGCCATATCATAATCTGTTCATTTCTTTTTCTCGGACTTTGACAGGTAACTATTTAGCCTATAGTTTAATATTTAGCTAGTGAATGGCCTAATATCTAGCTAATATTTCGCTTCTTAATCCGGCTAAACATCAATAGCCTCTCTCTTCCAGTTGTTCCCGTGCGCAACAGGCTATATGCCGCAAGCCTCTCCGAAATAGGCCATTCCTCTTCGTGTGAAATCCCAGTGAAAGTTATAGTCTACAAAAGCTATagacatttagatttttttatactAGGCCTAATAGTTTATTCGGGGAAAGAAGCATGATTGTTCTTGCTAATCGCTGAATGTAAAACAGGCCTACAACAGCATAGAAAATGCATGTCGAGGAAAATTGAGGGAAAGTGCATTGGTGTGATTACTTTTGGCCAGTTATGATACGATTGTTGCACTGATGCATTGCAAATAGTTGCACAGAACATACAGAGACGAGCACAGTGAAAAAGAAGACCCAAAGGAATTGACAACCATTACAAAAATGGAAATCCCTTGCAAACCACTGGAACAAAAAGGCAATGGCATGCAGTACAATATGTGCAGGCTAAATGGCATTTGTTGTTGAATTGCTACATTTAAATACAAGTTACTATATAATTTTTCACTAGGCCTACATGTACATTGAAGTAGCCTATTATTTGCAGTTGACAATGAACACACCCTAAAAGTACTGAATGGTCACTGAACCAGtagcctgtctgtgtgttagagacctcgtGAATGGTCTTGTGTTACCACCTTATCAATAGGCAGCCTGCAGTAGACTGCTTTGatcagttgattgacaggtgtAGGACTGTAGAATGATAAACGATCAGCTTTCCTCTAGGATGGAAGCTCACCAATGTTTTATAGTTATGCAGCCAATAGTTTATCATTGTAGTCAACATTAGAGTTATTGGCTTGGTGGATGGCCCAGGCCTTTGTTAACTCTACCACAACAGAACCAGCCTACTAggtctagctaacattagcgcacttgaatcaaataaaataaaataaaataatacttATACACTTACACTTACTTAAAACTATTTACTTTACTTTTATACTCTTATGAATTGACTCTTTCAAATAATTGACTCTGGAAAGTTTGCCACCAGCACGCTGCAGTAGGGATATAAAGTGGAAGTCGAATCCATCACATACATTGTTTGGCTGAGCCCATTGCAAATATCACTCCGATACTTGAATTTTGTAGGCTACTATGTGCTGTGCTGCATTTCCATTGTTTATGCTTTGAGTTTACGTATCCTTTTACTTGCTGATAACAGTTTTTTTCATGATATACCTGTTTTATTCTGCCACTTGCACTCCTGCACAGTTATCTTTACTCTCCGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765630 True 3481 lncRNA 0.38 2 34964360 34967877

Neighbor

gene id symbol gene type direction distance location
LOC110496076 LOC106588236 coding downstream 20469 34933039 ~ 34943891 (-)
zbtb22a LOC106588234 coding downstream 40404 34906715 ~ 34923956 (-)
sall3b LOC106588232 coding downstream 155860 34795394 ~ 34808500 (-)
atp9b atp9b coding downstream 169431 34735374 ~ 34794929 (-)
nfatc1 LOC106588230 coding downstream 259539 34645116 ~ 34704821 (-)
LOC110496078 LOC106588238 coding upstream 29595 34997472 ~ 34999239 (-)
LOC110496079 LOC106588239 coding upstream 44133 35012010 ~ 35016157 (-)
LOC110496800 LOC106588240 coding upstream 49101 35016978 ~ 35018421 (-)
ago3b i2c3 coding upstream 83518 35051395 ~ 35093817 (-)
LOC110496081 LOC106588241 coding upstream 183474 35151351 ~ 35203984 (-)
G1542906 NA non-coding downstream 5973 34958114 ~ 34958387 (-)
G1542905 LOC106600457 non-coding downstream 6870 34956665 ~ 34957490 (-)
G1542904 NA non-coding downstream 7863 34956285 ~ 34956497 (-)
G1542903 NA non-coding downstream 8578 34955532 ~ 34955782 (-)
G1542902 NA non-coding downstream 9099 34955054 ~ 34955261 (-)
G1542851 NA non-coding upstream 113 34967990 ~ 34968548 (-)
G1542847 NA non-coding upstream 766 34968643 ~ 34969518 (-)
G1542912 NA non-coding upstream 4338 34972215 ~ 34973095 (-)
G1542914 NA non-coding upstream 6599 34974476 ~ 34974755 (-)
G1542859 NA non-coding upstream 71331 35039208 ~ 35050281 (-)
G1541318 NA other downstream 801902 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1290129 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1353467 33602474 ~ 33610948 (-)
G1540473 LOC106581475 other downstream 1572608 33391339 ~ 33391752 (-)
G1542988 sast other upstream 169760 35137637 ~ 35138554 (-)
LOC110496085 NA other upstream 379018 35346895 ~ 35351655 (-)
G1543128 LOC106588245 other upstream 484741 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 527445 35492995 ~ 35499681 (-)

Expression


Co-expression Network