G1542993


Basic Information

Item Value
gene id G1542993
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35147641 ~ 35149555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765777
GAACTGCTGGCAAGGCAATTTGTGAGGCATTTCAATTGTTGATCACTCACTTTGAGACCTTAACATTGTTtcccgtggcttttgtggagcgatgggtaatgatgctttgtGGGTGAATGCTGTCTGTTTGCAGatggtccctggttcaagcccaggttggggcaaggagaagcaatatacagtggggcaaaaatgtatttagtcagccaccaattgtgcaagttctcccatttaaaaagatgagaggtctgtaatttatcataggtacacttcaactatgacagacaaaatgagaaaaaaagatccagaaaatcacattgtaggattttttatgaattttgttGCAAATTaattgtaacctcacttttgagaaaattgcccttgaatgttttggtacctactggaccTGGTACCTACTCTtctgtctacacccattcagcatcattcacaccctttTAAGCTTTAGCCTCACCCATCTCTAAGGATTCACATTTGAGGCTATGTCCTAAACAACCAAAGCTTTCAatactaaaggctggtttatactacgggtgTGCTCTGGCTATTCGTAAACTCAGAGCTTTGTCAGATTGgccattcgtaaattcagagcatttcgcTCTCAGAAggcacactggacactctggccgAAAAGGAGGGCTAATCCGAGTGTTCTGActtaacaacagcagtcaagcaccctagctggctaacgttggctagcttgctagctacttccagacacaaatgagagaacacctcactctgaccattttactcacactagcagagctggttaggccgtTTTTATGTTtaccagagcgttggtgactgcaactgtgctgctggcaacaatttaatcacgctttttttgccaacgttcactgacaccggccatattcaacagctGTTGAGCGTTCATAAACACTCcaacgagagtgctctgaaatcggagtagatagccagagcaaatttaccagctacatctatcgacagttgtcgcagtgacatcataaacattctattgaaatagttaCTTACATAGTGGcatcttttgtttagacatgtagctagctatataaACAATttaccataatcccaactcataacgttactaccctacatgaatctgcaggtagctaactaatcaggttcaatgttagctagctaacattaggccataactagcaatgcaaatggctctgagacgCGAATAAAATAACTACACATATCATACACATAACATTATCTAGCCAGCCAGCttgaaatgaaaacgactttgacaaaattagaaatgtgtaatatctgaaaatgtagctagctagactctcttacccgtatacatagATGGACGTTTCTCCCgctctgtcatggatgccatggtttGAAGATGTAATTTGGAGAATTCTGTGTGTTCTTTTCGACTcagtctgcatatttgcaatcaaaacggcagatttttctcCATCGCCTTagtatcatactctaattccactgatttcaaaacgcggtcctccagaaagtggagagcaacacttattcAGTTCTACTacatgatatctttcaaaaaagctgcattaaaaaggattacctacacatactgaccatttcatggttatagacagaagcgtgcaaCATGGCAGACCGATCCGAGCTCATCTCTTGttatgtccagcccactcattatctcagccaatcatggctagcgggaaggttgctggctTTTTCCATAGCTAAACCAACTATGTTCATAATTTAAccattgtattcgtatttacagatggcatacaagtttgtttaAGGCACATGtaccagaaggcatttctgccaaaaaacacattttgattaaatAAAAGAAAAAAGTTTGCATTCAAATGGCGCACCTGTGAAGTGGTGACGTACGACATATACCAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765777 True 1915 lncRNA 0.41 1 35147641 35149555

Neighbor

gene id symbol gene type direction distance location
ago3b i2c3 coding downstream 53824 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 129220 35016978 ~ 35018421 (-)
LOC110496079 LOC106588239 coding downstream 131484 35012010 ~ 35016157 (-)
LOC110496078 LOC106588238 coding downstream 148402 34997472 ~ 34999239 (-)
LOC110496076 LOC106588236 coding downstream 203750 34933039 ~ 34943891 (-)
LOC110496081 LOC106588241 coding upstream 1796 35151351 ~ 35203984 (-)
LOC110496085 NA coding upstream 198389 35346895 ~ 35351655 (-)
si:ch73-347e22.4 LOC106588244 coding upstream 228244 35377799 ~ 35392845 (-)
LOC110496091 LOC106588245 coding upstream 251171 35400726 ~ 35407830 (-)
LOC118941136 NA coding upstream 258424 35407979 ~ 35415035 (-)
G1542990 NA non-coding downstream 3474 35143824 ~ 35144167 (-)
G1542979 NA non-coding downstream 27391 35119977 ~ 35120250 (-)
G1542859 NA non-coding downstream 97360 35039208 ~ 35050281 (-)
G1542914 NA non-coding downstream 172886 34974476 ~ 34974755 (-)
G1542912 NA non-coding downstream 174546 34972215 ~ 34973095 (-)
G1542996 NA non-coding upstream 4757 35154312 ~ 35154536 (-)
G1542999 NA non-coding upstream 15368 35164923 ~ 35165151 (-)
G1543000 NA non-coding upstream 15988 35165543 ~ 35165780 (-)
G1543001 NA non-coding upstream 23733 35173288 ~ 35173583 (-)
G1543013 NA non-coding upstream 42438 35191993 ~ 35192196 (-)
G1542988 sast other downstream 9087 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 408002 34735374 ~ 34794929 (-)
G1541318 NA other downstream 985183 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1473410 33657641 ~ 33674304 (-)
LOC110496048 LOC106588215 other downstream 1536748 33602474 ~ 33610948 (-)
G1543128 LOC106588245 other upstream 303063 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 345767 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 861432 36010987 ~ 36012686 (-)

Expression


Co-expression Network