XLOC_003466


Basic Information

Item Value
gene id XLOC_003466
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25181857 ~ 25228195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008612
ttgggggtcgcgagtcactggcattgttattttaggggtcgcgtgtTAAAaactttgggaacccctgctgtaaGTAActatattatcatcaataacgtgacttGTTGAGCATAAGAGTTTGTAACATTGgctacaaaaacataaaaagctAAATCTtatctatgaaatgttctgcctttgtgcctattgtgttttgttttctttgttagcTTGTTACTACTCCCGTGTGGTTGAACGACATTTgccctgggagcactgtacaaatgtggcggcgctattgacgcaggCTCAGagtccgtatgcgatatctagacTAGTGTATCGATCTATGGCTTCCATACTTTCTGGTGCGGGTCGCCTCATGGTGGACGCCATTCAGGTTACATGTCTACTCACACACAAATCTTCATTATTAATATCGGTAACTCTTGCAcatagtaataatttaaagcgTAGTATTGTTAGTATCGATTTCTaaacaaaatgttacaaataGTGAATAGAAACGTGTGCTCCATCCACGCCGCTAGGTGTCAGCATAAGTCCATGACGACCGCCGTGACTAGTGcaccatgacagcagtttcaagGTTTCGGACCATTTTCTGGGACTCAGTGGCCAACCAATTTGCATGATTCAACTGAACCTCCATTTCATTCAGGTCATTCTCCATCTTCTTTTTCACCCTAATGGCTTCACTACGAGATTTTGCTTCTGCATCCAGCGTGGCTTGCATGGACTCTAGGGCACGCTGATGGTTACGGCT
>TCONS_00008613
CGACATTTgccctgggagcactgtacaaatgtggcggcgctattgacgcaggCTCAGagtccgtatgcgatatctagacTAGTGTATCGATCTATGGCTTCCATACTTTCTGGTGCGGGTCGCCTCATGGTGGACGCCATTCAGGTGTCAGCATAAGTCCATGACGACCGCCGTGACTAGTGcaccatgacagcagtttcaagGCATTGTCAGCAATGGAGTAGATGTGAGGTGGAGCCTCCGAGCGGCGTTTGCCTTTGTAGGCAGCCACTACAGGGGCAGTGTAGACGGGGAGCCATTTATATGGGTTCACGGTCACACAGAAGAGCCCAGAGTACGTCTGCCATGAGGAGATGACAAGATTAACACCAAaGTTTTATTTTGTCTTCAACATCGACAGTCATCTGAGCAGCGGCGGTGGTCTCTGAAACTCCCCCATGGTCCCGGCCTGGATAAAGGTTACAGATCCACTCAGCGGCAACAAGCAACACCCTTTCCACCGGCTCTTTAACATCTCCTCAATAACTCGTCAACTATTCTCTCCTCAACATACAGGACAAGTATTAGGCATTCTTTCAGTGGATGTCATCTGGACAGGAAAGGGTTATCTGACAGGAAGTGGAAGTCCTCCTGCCGCCCCATCCTGTGGCTGAAGGCCTGTGAGCCAGGAACCCCAGCACCCCccacctctctctctcctctcctgTTCCTCCGCAGGGCACGGCTGCCCGCTtgtgttttggtaatcttcatcCACCCTGACCTGCTGGCCTGCTCCTGGCGCCAGCAGTCTCAGAGCCCCCAGCACCCCTGATTCCCCTGGCTAATTCAGTCCAGCTGTTGCAAGGTGCCTCTGCCACCCCCACCCGTCACTGCACTTGCCATATCCCTCACAAACGCTAATGTGCTGCCTTTGCGGAAAACACAGAGCGCTTTTCATGCTCTTGTGAGAGGCAGGTATAAGAGGGACCTCGCAGCAGTTATTTGGTGGGTAAAAGAAGTTTGTTCAAGCAGGCTGAGGGGTTTCAGTGCTGCTTTGGCCCAAATTTAGATTAACGTACCACGACAAATCAGCGTGTGCTTTTTACTTGCATTCCATGAGGCTTTCTCTGCCAGTAAAACACACTTAAAAATAGGTTTAAATAGTGTGTACATAGTCTTATGtttcttaaaaacataaaagttCAAGTCTagataaaacaaatgtttattgtttaatttactatgtttaggattatttataaatatatttatctaaGACATTCTCTGGCTTTGAAAATCTGGCTTTCCCtggctatttcttttttttttttttggattttattaggcttttaatattaatgttaaaaagcatCATTTGTCTTGAATTTTAGTGAAAACTTTAGGTATACCTAAAAACAAAACTACTATTTATAAATCAGATGTTTTAAAGtatgtcatttaatttttttatgttttgaacaTTCCATCTAATtggttgtgtttattttttattattattattttttgtatcatTAAATCCAGGACAAAACTGTGCATATtttatgcaacacaggctcagtctgaaaacatagcccaatatacatttctggagatcgtgaattatgtagccagaagtacgtatggctgcattttatctttaaaacaaacactacagggtggtatgacgccgttcctttttttGCTtatcagctgactgcttacctccgtatacacggctttcccgctgttaccagtttgtcctgtagCTCAACATGTATATTGGTGGCCTTGGGAGGCAGAGCAAAGTTGACTTtgacaacagggttcgagtcaggtgaagaatggttctaaaaaatcaggtaaaacaaaaacacaagctaaaaaaataaaataaacgaataaataacagggtgagaaagtggtaaaatctgaaaacatggtaaaaatcagtcaagggcttttcttttttctggattgcttttaaaaacactgtggtTGAGTTTTGGTAAGTGGTAAGGTGGAGGGaacggtcggttggtcagtcagttagtaagtcagtcagtcgacagcggcctctggtggatttacgtga
>TCONS_00008614
TCTGTTGAATGTCATCTTCCTTGACAGTTAAGCACTACAGGATTGAGAGGCAATAAGTACAATTAGCGGATAAGTAAAAGaGTTTTATTTTGTCTTCAACATCGACAGTCATCTGAGCAGCGGCGGTGGTCTCTGAAACTCCCCCATGGTCCCGGCCTGGATAAAGGTTACAGATCCACTCAGCGGCAACAAGCAACACCCTTTCCACCGGCTCTTTAACATCTCCTCAATAACTCGTCAACTATTCTCTCCTCAACATACAGGACAAGTATTAGGCATTCTTTCAGTGGATGTCATCTGGACAGGAAAGGGTTATCTGACAGGAAGTGGAAGTCCTCCTGCCGCCCCATCCTGTGGCTGAAGGCCTGTGAGCCAGGAACCCCAGCACCCCccacctctctctctcctctcctgTTCCTCCGCAGGGCACGGCTGCCCGCTtgtgttttggtaatcttcatcCACCCTGACCTGCTGGCCTGCTCCTGGCGCCAGCAGTCTCAGAGCCCCCAGCACCCCTGATTCCCCTGGCTAATTCAGTCCAGCTGTTGCAAGGTGCCTCTGCCACCCCCACCCGTCACTGCACTTGCCATATCCCTCACAAACGCTAATGTGCTGCCTTTGCGGAAAACACAGAGCGCTTTTCATGCTCTTGTGAGAGGCAGGTATAAGAGGGACCTCGCAGCAGTTATTTGGTGGGTAAAAGAAGTTTGTTCAAGCAGGCTGAGGGGTTTCAGTGCTGCTTTGGCCCAAATTTAGATTAACGTACCACGACAAATCAGCGTGTGCTTTTTACTTGCATTCCATGAGGCTTTCTCTGCCAGTAAAACACACTTAAAAATAGGTTTAAATAGTGTGTACATAGTCTTATGtttcttaaaaacataaaagttCAAGTCTagataaaacaaatgtttattgtttaatttactatgtttaggattatttataaatatatttatctaaGACATTCTCTGGCTTTGAAAATCTGGCTTTCCCtggctatttcttttttttttttttggattttattaggcttttaatattaatgttaaaaagcatCATTTGTCTTGAATTTTAGTGAAAACTTTAGGTATACCTAAAAACAAAACTACTATTTATAAATCAGATGTTTTAAAGtatgtcatttaatttttttatgttttgaacaTTCCATCTAATtggttgtgtttattttttattattattattttttgtatcatTAAATCCAGGACAAAACTGTGCATATtttatgcaacacaggctcagtctgaaaacatagcccaatatacatttctggagatcgtgaattatgtagccagaagtacgtatggctgcattttatctttaaaacaaacactacagggtggtatgacgccgttcctttttttGCTtatcagctgactgcttacctccgtatacacggctttcccgctgttaccagtttgtcctgtagCTCAACATGTATATTGGTGGCCTTGGGAGGCAGAGCAAAGTTGACTTtgacaacagggttcgagtcaggtgaagaatggttctaaaaaatcaggtaaaacaaaaacacaagctaaaaaaataaaataaacgaataaataacagggtgagaaagtggtaaaatctgaaaacatggtaaaaatcagtcaagggcttttcttttttctggattgcttttaaaaacactgtggtTGAGTTTTGGTAAGTGGTAAGGTGGAGGGaacggtcggttggtcagtcagttagtaagtcagtcagtcgacagcggcctctggtggatttacgtga
>TCONS_00006796
ATTACACACGCCTATCCCAAATGACAAGTACTCACAGAATTCACGTTGaGTTTTATTTTGTCTTCAACATCGACAGTCATCTGAGCAGCGGCGGTGGTCTCTGAAACTCCCCCATGGTCCCGGCCTGGATAAAGGTTACAGATCCACTCAGCGGCAACAAGCAACACCCTTTCCACCGGCTCTTTAACATCTCCTCAATAACTCGTCAACTATTCTCTCCTCAACATACAGGACAAGTATTAGGCATTCTTTCAGTGGATGTCATCTGGACAGGAAAGGGTTATCTGACAGGAAGTGGAAGTCCTCCTGCCGCCCCATCCTGTGGCTGAAGGCCTGTGAGCCAGGAACCCCAGCACCCCccacctctctctctcctctcctgTTCCTCCGCAGGGCACGGCTGCCCGCTtgtgttttggtaatcttcatcCACCCTGACCTGCTGGCCTGCTCCTGGCGCCAGCAGTCTCAGAGCCCCCAG

Function

GO:

id name namespace
GO:0005534 galactose binding molecular_function
GO:0004335 galactokinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000104755

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008612 False 766 lncRNA 0.43 2 25181857 25189277
TCONS_00008613 False 2074 lncRNA 0.44 5 25182092 25228195
TCONS_00008614 False 1782 lncRNA 0.41 3 25211656 25228195
TCONS_00006796 True 481 lncRNA 0.53 3 25212540 25226926

Neighbor

gene id symbol gene type direction distance location
XLOC_003465 trpc4apa coding upstream 1527 25157374 ~ 25180330 (+)
XLOC_003464 ndrg3a coding upstream 26854 25064519 ~ 25155003 (+)
XLOC_003462 phf20a coding upstream 118271 25044082 ~ 25063586 (+)
XLOC_003463 NA coding upstream 121759 25059462 ~ 25060098 (+)
XLOC_003461 zgc:92107 coding upstream 138643 24994705 ~ 25043214 (+)
XLOC_003467 NA coding downstream 28617 25256812 ~ 25266235 (+)
XLOC_003468 cyldb coding downstream 48553 25276748 ~ 25291709 (+)
XLOC_003469 top1l coding downstream 68171 25296366 ~ 25311677 (+)
XLOC_003470 fam83d coding downstream 100004 25328199 ~ 25336921 (+)
XLOC_003471 si:dkeyp-97e7.9 coding downstream 160552 25388747 ~ 25397129 (+)
XLOC_003369 CR854846.2 misc upstream 9058775 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12469861 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12487594 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12496258 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12501829 12679732 ~ 12680028 (+)
XLOC_003447 BX072564.1 non-coding upstream 600743 24580579 ~ 24581114 (+)
XLOC_003442 NA non-coding upstream 871212 24120291 ~ 24310645 (+)
XLOC_003487 NA non-coding downstream 601175 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 849752 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 960322 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 997887 26226082 ~ 26234069 (+)
XLOC_003444 AL831791.1 non-coding upstream 1002919 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 1004206 24176418 ~ 24177651 (+)

Expression


Co-expression Network