G1541952


Basic Information

Item Value
gene id G1541952
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35183025 ~ 35183334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764574
ccacatgtacacctccaactgactcaaattatgtcaattagcctatcagaatcttctaaagccatgacatcattttcttgaattttccaagctgtttaaaggcacaatcaacttagtgtatgtaaacatctgagccactggaattgtaatacagtgaattataattgaaataatctgtctgtaaacaattgttggaaagattacgtgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactaaagtttgttaacaagaaatgtgtggagtggttgaaaaactagttttagtgactccaacct

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764574 True 310 lncRNA 0.35 1 35183025 35183334

Neighbor

gene id symbol gene type direction distance location
olah sast coding upstream 43191 35131761 ~ 35139834 (+)
LOC110496075 LOC106588237 coding upstream 196837 34959423 ~ 34986188 (+)
LOC110496074 NA coding upstream 261274 34918537 ~ 34921751 (+)
mbpa LOC106588233 coding upstream 284612 34883492 ~ 34898413 (+)
LOC110496067 LOC106588229 coding upstream 543068 34633226 ~ 34640621 (+)
LOC110496082 LOC106588242 coding downstream 60863 35237754 ~ 35324664 (+)
tomm40l LOC106588243 coding downstream 151714 35335048 ~ 35348295 (+)
LOC118941149 NA coding downstream 229437 35412771 ~ 35433941 (+)
LOC118941148 NA coding downstream 257809 35441143 ~ 35504636 (+)
LOC110496101 LOC106588519 coding downstream 706232 35889566 ~ 35908363 (+)
G1541947 NA non-coding upstream 8231 35174560 ~ 35174794 (+)
G1541946 NA non-coding upstream 10018 35172761 ~ 35173007 (+)
G1541944 NA non-coding upstream 16573 35166232 ~ 35166452 (+)
G1541943 NA non-coding upstream 19169 35163636 ~ 35163856 (+)
G1541942 LOC106613263 non-coding upstream 19758 35162923 ~ 35163267 (+)
G1541956 NA non-coding downstream 3185 35186519 ~ 35186751 (+)
G1541987 NA non-coding downstream 95875 35279209 ~ 35280296 (+)
G1542015 NA non-coding downstream 126309 35309643 ~ 35309861 (+)
G1542017 NA non-coding downstream 133298 35316632 ~ 35316832 (+)
LOC110496058 LOC106588349 other upstream 1053366 34127192 ~ 34133734 (+)
G1540996 NA other upstream 1103951 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1645461 33535229 ~ 33537569 (+)
G1540551 NA other upstream 1691904 33489337 ~ 33491121 (+)
G1541989 NA other downstream 99269 35282603 ~ 35283706 (+)
G1542037 LOC106588244 other downstream 191910 35373871 ~ 35386463 (+)
G1542052 LOC106588245 other downstream 218503 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 295501 35478835 ~ 35502933 (+)
G1542090 NA other downstream 346209 35529543 ~ 35606179 (+)

Expression


Co-expression Network