G1542017


Basic Information

Item Value
gene id G1542017
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35316632 ~ 35316832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764649
ccgctgctaccgattggatatagtggctaacgccactgccacgaagctagaaCCAGTTAGCtgtgagccaggcacatctcccggctagcaaactaaattccacaatacctctttcgccatctggcttggattctctgtcgacacggcgccccgccgcaccaccacgactggtctgccgacgaatactccatccgctgtgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764649 True 201 lncRNA 0.57 1 35316632 35316832

Neighbor

gene id symbol gene type direction distance location
olah sast coding upstream 176798 35131761 ~ 35139834 (+)
LOC110496075 LOC106588237 coding upstream 330444 34959423 ~ 34986188 (+)
LOC110496074 NA coding upstream 394881 34918537 ~ 34921751 (+)
mbpa LOC106588233 coding upstream 418219 34883492 ~ 34898413 (+)
LOC110496067 LOC106588229 coding upstream 676675 34633226 ~ 34640621 (+)
tomm40l LOC106588243 coding downstream 18216 35335048 ~ 35348295 (+)
LOC118941149 NA coding downstream 95939 35412771 ~ 35433941 (+)
LOC118941148 NA coding downstream 124311 35441143 ~ 35504636 (+)
LOC110496101 LOC106588519 coding downstream 572734 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 654225 35971057 ~ 35974902 (+)
G1542015 NA non-coding upstream 6771 35309643 ~ 35309861 (+)
G1541987 NA non-coding upstream 36336 35279209 ~ 35280296 (+)
LOC110496082 LOC106588242 non-coding upstream 70706 35237754 ~ 35324664 (+)
G1541956 NA non-coding upstream 129881 35186519 ~ 35186751 (+)
G1541952 NA non-coding upstream 133298 35183025 ~ 35183334 (+)
G1541982 NA non-coding downstream 8858 35325690 ~ 35327753 (+)
G1542032 NA non-coding downstream 48006 35364838 ~ 35367546 (+)
G1542036 NA non-coding downstream 56006 35372838 ~ 35373207 (+)
G1542037 LOC106588244 non-coding downstream 57039 35373871 ~ 35386463 (+)
G1542038 NA non-coding downstream 70139 35386971 ~ 35387648 (+)
G1541989 NA other upstream 32926 35282603 ~ 35283706 (+)
LOC110496058 LOC106588349 other upstream 1186973 34127192 ~ 34133734 (+)
G1540996 NA other upstream 1237558 34078718 ~ 34079074 (+)
LOC110496043 LOC106588212 other upstream 1779068 33535229 ~ 33537569 (+)
G1542052 LOC106588245 other downstream 85005 35400723 ~ 35481348 (+)
G1542051 LOC106588245 other downstream 162003 35478835 ~ 35502933 (+)
G1542090 NA other downstream 212711 35529543 ~ 35606179 (+)
G1542253 NA other downstream 519004 35835836 ~ 35836617 (+)

Expression


Co-expression Network