G1543088


Basic Information

Item Value
gene id G1543088
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35327890 ~ 35330154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765888
CTAGCTCTTACTCGTGTTTTTAAGGACATGATTACCTTTTCCAAACATCTTGGAGTTAACCACAAGTGAACCTTCCCTCCCCCATTTGTACTCATTCATTCACACAGTCACATCTCGACTCAATGGCCAagagcacgcacacacagatcCACACAGGATTAGACAGttacatacactcagtggccagtttattaggtacactacACCGCTCACGAAAATGGTTAGCTGCTACAGACAAcgagtcacgtggccgtggcttgctaaaTATAGGCAATGTAGCATATACAGGCATCGACGCATTCAGTTACTGGTCAactgaacgttagaatgggcaaaatgaGTGACCTAAGCATCTGAGCGTGTTATGATCGTCAGTGTCAAGCGCGCCAGTTCCAGTATTTCAAAAAAAATGTCCGGCTTTCTTTTCATGCaagacagtgtctagggtttacaaaGAATGGTGTGATAAATAAAACACATCCAGCCAGGGACAGTCCTGTtggtgaaaacagctcgttgatgagaggtcatGGTGAATGGCAAGAatcatgcaagctaacaggcaggccacaaacaggcaaataacggcgcagtacaacagtggtgagCAGAACGGCATCTCTGAAAGCACAACTTGTGGATTCTTGtcatggatgggctattgcagcagacgaccacaccgggttccaaacctatcagctaaaaacaagaagcggctccagtgagTACCGAATCACCCACACTGGACAATtaaggagtggaaaaacattgcctggtccgacgaagcccggttcctgttgcgtcatacTGATGGCAGAGTCGGGATTTGGTGTAAGCAATTCCATGGccacatcctgcctggtgtcaacagtacaggctgatggtggtggtgtaatggtttgctgaatgttttcctggcacacattaggtcccttgataggaattgagcaatgtttccatgccccaaataattcaggctgttctggaggcaaagggggggtcTGACcaggtactagatgggtgtacctaataaactgagtaTACAGACATTTACCCACTGACATAGACTGAATATTCCATCTCTACACTCTTAACATTGCCTGTTTTCTAGTCCCCTTTGTGACCACTGATCGGAAAGAACAGTATGTGAAAGGAATTTGAAAAACTCTGCCTTGGGCTAGTTTGGGGTTTACACTATATGGCTAGTGTTGACCTATTCTGTCTTTGCACAGTATGGGTCACAAAGTAGACCAGAAAACAGGCTATGGACAACAGCCATACAGGTATTAAGACATTGTATGTCACTCACAgacaaacaagcacacataaacaTTCACAATTGCATACAGAAATTCACATTTCAGCCAATTGAACACCCAACCAAACAATCGTACAGAACAGCCATtcatatacagacacacaggcaATCACATTCATACCAACAAACAAATGAGACGGGACACTAACTTACTCTTAAAACACACCAACCAACCCTGTTTCGCACACACCAACTTTCTCTCTAtgacgcacgtgcacacacacacacacacacacacacacacacacactgacagtcactcacGCAAAGCACACAAAATGCCATGACGTGacattacacttttttggtttcggTTCAATATAAATCCTGAAAGTCAGTATTTAAaatcaaacaaaataaaaaaaaatctaatattcAAAACTACCTCCACCATGAAGCAAAttcatattttttgtttgttattgtaAACAAATCGTGTAAACAACAAATTATTTACAAACCAATTTCCTCAAAATGATACCAACCACCTCGTAAAAAGATTGACCTAGATAACCAGTATGACTGCTCGGATAGCATTCTCTCCAGTACTTAAAATAAGCAAACTAATTGTCAAAATAGAATACTTTTTTGTACTTTGGGAAAAAAATTACAAATGTGTTGAGTTTCAGATCTGTTGCAAACCATATTGGTTGGTCCACTGTTGTGCTGGAGTTCTTAAGTACCAGAGAGAAGAAAAAATTCAAGATGACTCGCAAACCCACACAAACCCTGTGCCATAAAACCCTGCTCTGCCCCCCTCCCTGATTAGCAAGCATTGTCAAAAATAATTTCAAAGAGAAGCAAAAAAAACATCACATATTTTCCTCTGCATTCATCATCAAGCTAAACATTTGTAGCAGGACCAAAAAAAAGATTACAGCTGCCAGTTTGAAGATGCTACAATTCGCTTTCAAATATAATTCTGATGTGAGCCAACCCACCCCACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765888 True 2265 lncRNA 0.42 1 35327890 35330154

Neighbor

gene id symbol gene type direction distance location
LOC110496081 LOC106588241 coding downstream 123906 35151351 ~ 35203984 (-)
ago3b i2c3 coding downstream 234073 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 309469 35016978 ~ 35018421 (-)
LOC110496079 LOC106588239 coding downstream 311733 35012010 ~ 35016157 (-)
LOC110496078 LOC106588238 coding downstream 328651 34997472 ~ 34999239 (-)
LOC110496085 NA coding upstream 17790 35346895 ~ 35351655 (-)
si:ch73-347e22.4 LOC106588244 coding upstream 47645 35377799 ~ 35392845 (-)
LOC110496091 LOC106588245 coding upstream 70572 35400726 ~ 35407830 (-)
LOC118941136 NA coding upstream 77825 35407979 ~ 35415035 (-)
LOC118941138 NA coding upstream 85034 35415188 ~ 35419901 (-)
G1543087 NA non-coding downstream 100 35325842 ~ 35327790 (-)
G1543093 NA non-coding downstream 6842 35320778 ~ 35321048 (-)
G1543092 NA non-coding downstream 7406 35319807 ~ 35320484 (-)
G1543089 NA non-coding downstream 11378 35316308 ~ 35316512 (-)
G1543081 NA non-coding downstream 21004 35306683 ~ 35306886 (-)
G1543086 NA non-coding upstream 2118 35332272 ~ 35334302 (-)
G1543103 NA non-coding upstream 10248 35340402 ~ 35360570 (-)
G1543097 NA non-coding upstream 43694 35373848 ~ 35375167 (-)
G1543096 NA non-coding upstream 45277 35375431 ~ 35376793 (-)
G1543118 NA non-coding upstream 66212 35396366 ~ 35396641 (-)
G1542988 sast other downstream 189336 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 588251 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1165432 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1653659 33657641 ~ 33674304 (-)
G1543128 LOC106588245 other upstream 122464 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 165168 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 680833 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1971354 37301508 ~ 37302174 (-)

Expression


Co-expression Network