G1543086


Basic Information

Item Value
gene id G1543086
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35332272 ~ 35334302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765886
CCCTGTATTAATTCCAATGTCATTAAAACTCTGATAGAAGTAGATAATTGAAGTACACTTCTTGTATTGGTTGTTTCTAGGGTTACCGAGGGGGAGGTGTAACAAGCCAAATTGACATAGTTGCATTTTAAATTGTAATATTGTAAGAAAATTAATGGTGCAACTTTACCCATCTACTTTCTCTATAATCAGATCAAGCATACATGTATGCTCCAATATAGTGGCTGACTACGGCTGTCTGATTTGTAAGACAAACTACCTCGTCAAAGTTTCAGTATTAAGACCTCCGTTTGTAATTCTCACTCTAAATGGGGCTGAACAGTTTTGAAAATAACAAATGAGAAAGTAAAAGGAATAGCCACCAAGGTGTGTACAttcccacatacagtgccttcagaaagtgttcacaccccttgaattttcCCACATTTTATGAAAAGCTAaattgtcttgagtcaataagtattcaaacccctttgttatgacaagacAAAATACGTTTGGGAgaaaaaaatgtgcttaagtttcatggactcactgtgtgcaatagtgtttaacatgattttttaatgactacctcatctctgtacctcacacatataTTTATCCCTTAGTCAAGCTggaggatggatcaacaatattgtagttactccacaatacaaacctaattgacagagtgaaaaggaagactgtatagaataaaaatattccaaaacatgcatcctgtttgcatcaaggcactaaagtaatactgcaaaaaaatgtggcaaagcaattcactgtttgtcctgaatacaaagtgttatgtttgtggaAAATCAAACGcaaacattactgagtaccactctccatattttcaagcatagtggtggctgcatcatgttataggtaagcttgtaatcattaaggactggggagtttctcAGGATAAAAaggaaacggaatggagctaaacacagacaaaatcctaAAGGGAAAGCTggctcagtctgctttccaccagtcactgggagattaattcatatttcagcagggcaataacctaaaacacaaggccaaatctacactggagttacttaccaagaaggaagtgaatgttcctgagtggccgagttatagTTTTGCATTAAAATCTACTTGATAACTATGACAAGTCCTGAAAATGGTTGCCTAGCAATGAtcaagagcttgaagaattttgaaaataataaatgggtaaatgttgcacaatccaggtgtggaaagctcttacccagaaagactcacagttgtattcgctgccaaaggtgcttctacaaagtattgattcaggggtgtgaatacttatgtaaatgagatatttatgcatttcatttgaaaacatttctaaaaacatgttttcacttggtcattatggggtattgtgtgtagatgggtgagaaagaaatcaatttaatccattttgaattcaggctgcaacaacaaaatgtggaataagtcaaggggtattaatactttctgaaggcactgtacaataaCTACAGAAAACACAGGACAACTGAATTCTGAAATGGCTTCTCCCCCTTAATGACCACATAATTTGTTTTACTCACTTATGTGACAAATTTAACCGTGGCTATGTTTAAAAGTTCCAAACAAGtaatttaattaattaaattTAGCAAATTAGAATTTTAGTACCAGTCATTCATCCAGTTTCCAGGAACAGGATACACTATTTTCTTTCCAGCTCTTGCAGAATTCAGTCTCTCAGTTTATTGAATGTAGCGTCTCTGCATGTAAGAGGAGTCTGCATTAGAGAAGCACAACACAGTCATGCATGCAATTCAGAATTTGTGCAActgtagatacagtggggagaacaagtatttgatacactgccaatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765886 True 1886 lncRNA 0.36 2 35332272 35334302

Neighbor

gene id symbol gene type direction distance location
LOC110496081 LOC106588241 coding downstream 128288 35151351 ~ 35203984 (-)
ago3b i2c3 coding downstream 238455 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 313851 35016978 ~ 35018421 (-)
LOC110496079 LOC106588239 coding downstream 316115 35012010 ~ 35016157 (-)
LOC110496078 LOC106588238 coding downstream 333033 34997472 ~ 34999239 (-)
LOC110496085 NA coding upstream 13642 35346895 ~ 35351655 (-)
si:ch73-347e22.4 LOC106588244 coding upstream 43497 35377799 ~ 35392845 (-)
LOC110496091 LOC106588245 coding upstream 66424 35400726 ~ 35407830 (-)
LOC118941136 NA coding upstream 73677 35407979 ~ 35415035 (-)
LOC118941138 NA coding upstream 80886 35415188 ~ 35419901 (-)
G1543088 NA non-coding downstream 2118 35327890 ~ 35330154 (-)
G1543087 NA non-coding downstream 4482 35325842 ~ 35327790 (-)
G1543093 NA non-coding downstream 11224 35320778 ~ 35321048 (-)
G1543092 NA non-coding downstream 11788 35319807 ~ 35320484 (-)
G1543089 NA non-coding downstream 15760 35316308 ~ 35316512 (-)
G1543103 NA non-coding upstream 6100 35340402 ~ 35360570 (-)
G1543097 NA non-coding upstream 39546 35373848 ~ 35375167 (-)
G1543096 NA non-coding upstream 41129 35375431 ~ 35376793 (-)
G1543118 NA non-coding upstream 62064 35396366 ~ 35396641 (-)
G1543122 NA non-coding upstream 65952 35400254 ~ 35400492 (-)
G1542988 sast other downstream 193718 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 592633 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1169814 34161927 ~ 34162458 (-)
LOC110496049 LOC106588217 other downstream 1658041 33657641 ~ 33674304 (-)
G1543128 LOC106588245 other upstream 118316 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 161020 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 676685 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1967206 37301508 ~ 37302174 (-)

Expression


Co-expression Network