G1542047


Basic Information

Item Value
gene id G1542047
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35396381 ~ 35396998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764693
actcaccacaggttaatgagaagggtgtgcttgaaaggatgcacataactctgcaatgttgggttgtattggagagagtctcagtcttaaatcattttccacacacagtctgtgcctgtatttagttttcatgctagtgagggccgagaatccactctcacataggtacgtggttgcaaagggcatcagtgtcttaacagcgcaatttgccaaggcaggatactctgagtgcagcccaatccagaaatctggcagtggcttctgattaaattcaattttcacagaaccgttGCAATTTCGAAGAGGCTCTCTTGTTCcgatatcagtaagtggactggaggcagggcatgaaagggataatgaatccagttgtttgtgtagtccgtttcgggaaagtacctgcgtaattgtgcacccaactcactcaggtgcatcactatatcacatttgacattgtccataagcttgagttaatttgcacacagaAAAATCAttcaatgatggaaagacctgtgtgatgtccttgttaatgcagatagagaagagctccaacttcttaatcgtagcctcaattttgtcccgcacattgaatatagttgcgaagagtccctgtaatcc

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764693 True 618 lncRNA 0.44 1 35396381 35396998

Neighbor

gene id symbol gene type direction distance location
tomm40l LOC106588243 coding upstream 48086 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 71717 35237754 ~ 35324664 (+)
olah sast coding upstream 256547 35131761 ~ 35139834 (+)
LOC110496075 LOC106588237 coding upstream 410193 34959423 ~ 34986188 (+)
LOC110496074 NA coding upstream 474630 34918537 ~ 34921751 (+)
LOC118941149 NA coding downstream 15773 35412771 ~ 35433941 (+)
LOC118941148 NA coding downstream 44145 35441143 ~ 35504636 (+)
LOC110496101 LOC106588519 coding downstream 492568 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 574059 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 602201 35999199 ~ 36021773 (+)
G1542044 NA non-coding upstream 2002 35394126 ~ 35394379 (+)
G1542043 NA non-coding upstream 3202 35392954 ~ 35393179 (+)
G1542038 NA non-coding upstream 8733 35386971 ~ 35387648 (+)
G1542037 LOC106588244 non-coding upstream 16375 35373871 ~ 35386463 (+)
G1542036 NA non-coding upstream 23174 35372838 ~ 35373207 (+)
G1542052 LOC106588245 non-coding downstream 3725 35400723 ~ 35481348 (+)
G1542071 NA non-coding downstream 31039 35428037 ~ 35435399 (+)
G1542057 LOC106588245 non-coding downstream 34033 35431031 ~ 35444970 (+)
G1542051 LOC106588245 non-coding downstream 88828 35478835 ~ 35502933 (+)
G1541989 NA other upstream 112675 35282603 ~ 35283706 (+)
mbpa LOC106588233 other upstream 497970 34883492 ~ 34898413 (+)
LOC110496058 LOC106588349 other upstream 1266722 34127192 ~ 34133734 (+)
G1540996 NA other upstream 1317307 34078718 ~ 34079074 (+)
G1542090 NA other downstream 132545 35529543 ~ 35606179 (+)
G1542253 NA other downstream 438838 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 439679 35836677 ~ 35837543 (+)

Expression


Co-expression Network