G1543124


Basic Information

Item Value
gene id G1543124
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35400728 ~ 35408945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765931
TTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTGCAACATCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGTTTTTGATGTTTTTAATCTCAATAAAACCTAAAATATGA
>TU1765932
TTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCCTAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGTTTTTGATGTTTTTAATCTCAATAAAACCTAAAATATGA
>TU1765933
TTGCCAAAGCTTTGAATGTAACAACTTCCCCGTCCCAGCTATCTTTGTTTCGATATAGATGTTGTTAGTATCACTATCATGGCACCCTTttacctataaagtgcactacttttgaccaaagccccatggaccctggtcaaaagtaatgcactataaggggaatatggtgccatttgggactgtaCCATAATCATAGTTGTTTTCTTTCACTTGGTTCATTGCATACTTCACCTTGTGGAGTCAAGACGGTACCTGTAAACTTCCAATCCATCATCCTTAAGATTTCTCTTAGAAGATGTATGGTTATTCACTATTGTGATGGTTTTGTTTGCCAGTATCATCCTTGTAATTCACTCAACATCACTCCTCACAGTTCTTTTTAAGACTTTTTATGTCAGCTCTTTTTACTTGTTTTTTATCACTTGGCTTTCATCTGAAGTGGATGGCTTGGTTTCACAGACTCTGGGTGATGTTGTGTGTAAATGTTCAGATTGTATGTTAAACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTGCAACATCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCGTAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGTTTTTGATGTTTTTAATCTCAATAAAACCTAAAATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765931 False 965 lncRNA 0.35 2 35400728 35408945
TU1765932 False 965 lncRNA 0.35 2 35400728 35408945
TU1765933 True 965 lncRNA 0.35 2 35400728 35408945

Neighbor

gene id symbol gene type direction distance location
si:ch73-347e22.4 LOC106588244 coding downstream 7883 35377799 ~ 35392845 (-)
LOC110496085 NA coding downstream 49073 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 coding downstream 196744 35151351 ~ 35203984 (-)
ago3b i2c3 coding downstream 306911 35051395 ~ 35093817 (-)
LOC110496800 LOC106588240 coding downstream 382307 35016978 ~ 35018421 (-)
LOC118941138 NA coding upstream 6243 35415188 ~ 35419901 (-)
LOC110496802 LOC106588245 coding upstream 13429 35422374 ~ 35427024 (-)
LOC118941137 NA coding upstream 20626 35429571 ~ 35436004 (-)
LOC118941147 LOC106588245 coding upstream 27214 35436159 ~ 35440127 (-)
LOC118941146 LOC106588245 coding upstream 34317 35443262 ~ 35446995 (-)
G1543122 NA non-coding downstream 236 35400254 ~ 35400492 (-)
G1543118 NA non-coding downstream 4087 35396366 ~ 35396641 (-)
G1543096 NA non-coding downstream 23935 35375431 ~ 35376793 (-)
G1543097 NA non-coding downstream 25561 35373848 ~ 35375167 (-)
G1543103 NA non-coding downstream 40158 35340402 ~ 35360570 (-)
G1543155 NA non-coding upstream 13387 35422332 ~ 35472010 (-)
G1543161 NA non-coding upstream 68802 35477747 ~ 35485186 (-)
G1543125 LOC106588245 non-coding upstream 69890 35478835 ~ 35502036 (-)
G1543163 NA non-coding upstream 75062 35484007 ~ 35491478 (-)
G1543133 NA non-coding upstream 84053 35492998 ~ 35500613 (-)
G1542988 sast other downstream 262174 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 661089 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1238270 34161927 ~ 34162458 (-)
G1543128 LOC106588245 other upstream 43673 35452618 ~ 35504157 (-)
LOC118941140 NA other upstream 86377 35492995 ~ 35499681 (-)
G1543346 LOC106588513 other upstream 602042 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1892563 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2513210 37922153 ~ 37930745 (-)

Expression


Co-expression Network