G1543133


Basic Information

Item Value
gene id G1543133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35492998 ~ 35500613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765949
ACATGTCTTCATCTAGTCtggtatttgtttatttaattaagTATGTGCTGGACCATGATATCAACAGTTCATATTGCATTACAACTTCGTAAATTCTGTAATATAAAAATAGTAATTGAGGTACACAACAGAATCTATCATTTGTATGAATTCATGTTCCTGTGACCAAAGCTTGTTAGTTTCATGTTTTCAACTTGGTCTCTCAACTTGGTCTGTTGCTTGGATTAATACAATGTTCTTCAAGATGCAGTTAGAACTATAGAGATACATACCATAAGTTTTACCtatgtatttatctctgtgatcAGAAACAGGTCTGTGAAACCTCCCCAACGTTCATTTGAGGGTAATgtgaatttctgtttttttagaGAGAGCAAATATTTAGAAAGTTTCATGTAATAAAGTGAAATGTCAAACTTTGtttttgatgtttttttaatCTCAATAAAACCTCAAATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765949 True 465 lncRNA 0.31 2 35492998 35500613

Neighbor

gene id symbol gene type direction distance location
LOC118941141 NA coding downstream 4481 35485826 ~ 35488517 (-)
LOC118941139 NA coding downstream 9663 35478658 ~ 35483335 (-)
LOC118941143 LOC106588245 coding downstream 16892 35471584 ~ 35476106 (-)
LOC118941145 LOC106588245 coding downstream 23966 35464507 ~ 35469032 (-)
LOC118941142 LOC106588245 coding downstream 28778 35457434 ~ 35464220 (-)
LOC118941150 NA coding upstream 19510 35519535 ~ 35679900 (-)
LOC110496097 LOC105009768 coding upstream 217342 35717955 ~ 35721190 (-)
LOC110496098 LOC106588247 coding upstream 240739 35741352 ~ 35808050 (-)
LOC110496099 LOC106588248 coding upstream 308353 35808966 ~ 35816670 (-)
LOC110496100 LOC106588520 coding upstream 371072 35871685 ~ 35882464 (-)
G1543163 NA non-coding downstream 1520 35484007 ~ 35491478 (-)
G1543161 NA non-coding downstream 7812 35477747 ~ 35485186 (-)
G1543155 NA non-coding downstream 20988 35422332 ~ 35472010 (-)
G1543124 NA non-coding downstream 84053 35400728 ~ 35408945 (-)
G1543122 NA non-coding downstream 92506 35400254 ~ 35400492 (-)
G1543154 NA non-coding upstream 10859 35511472 ~ 35511985 (-)
G1543148 NA non-coding upstream 16526 35517139 ~ 35517936 (-)
G1543265 NA non-coding upstream 251418 35752031 ~ 35752372 (-)
G1543285 NA non-coding upstream 342564 35843177 ~ 35843412 (-)
LOC110496085 NA other downstream 143336 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 312970 35151351 ~ 35203984 (-)
G1542988 sast other downstream 354444 35137637 ~ 35138554 (-)
atp9b atp9b other downstream 753359 34735374 ~ 34794929 (-)
G1541318 NA other downstream 1330540 34161927 ~ 34162458 (-)
G1543346 LOC106588513 other upstream 510374 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1800895 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2421542 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2646977 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2664637 38165250 ~ 38214049 (-)

Expression


Co-expression Network