G1542056


Basic Information

Item Value
gene id G1542056
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35512362 ~ 35518068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764753
acgtgagtgctacgggtctgtagtcatttaggcaggttcccttcgtgttcttgggcacagggactatggtggtctgcttgaagcatgttggtattacagactcaatcagggacatgttgaaatgtcagtgaagacacctgccagttggtcagcacatgccccgagcacacatcctggtaatccgtctggccccgcagccttgtgtatgttgacctgtttaaaggtcttactcacgtcggctacggagagcgtgatcacacagtcatccggggaacagctgatgctctcatgcatgcctcagtgttgcttgcctcgaagtgagcatagaagtgatttagctcgtctggtaggctcatgtcactgggcagctctcggctgtgcttccctttgtagtctgtaatagtttgcaagccctgccacatccaacgagcatcggagccggtgtagtatgattcaatcttagccctgtattgacgctttgcctgtttgatggttcgtcgcagggcatagcggtatttcttgtaagcttccggattagagtcccgcaccttgaaagcgtcagctctaccctttagctcagtgcgaatgttgcctgtaatcgatggcttctggttggggtatgtacctaccgtcactgtggggacgacgtcctcaatgcattTATTGATAAacccagtgactgatgtggtgaattcctcaatgtcattggaAAAATCCCGGAagatgttccagtctgtgatagcaaagcagtcctgtagtttagcatctgcttcatctgacaatttttttatagaccgagatactggtgcttcctgctttaattttagcttgtaagcaggaatcaggaggatagagttgggGTCGGATTtatcaaatggagggcgagggagagctttgtacgcatctctgtgtgtggagtacaggtgatctagatttttttcccctctggttgcacatttaacatgttgatagagatttggtagaactgattttagtttccctgcattaaagtctccagccactaggagcgccgcctctgggtgagtggtttcctgtttgcttatttccttatacagctgactgagtggggtcttagtgccagcatctgtctgtggtggtaaataaacagctacGTAAAGTATagtgagaactctctaggcaagtagtgtggcctgcagtttatcacaatatatagagacttccttagatttcgtgcaccagctgttgtttacaaatgtcctgatatccagaagctcttttcttccgtaatatacggttgcagaaacactatgtacaaaataatttacaaattcgccacataatagcacaattggttaggagaccgtaaaacggtGGCCATCTCCTCTGGCGCCATCACCTaaaaacctctcactcaacgtcaacaaaacaaaggagaagaTCGTggccttcaggaaacagcagagggagcaaccccctatccacatctataggacagtagtggagaaggtggaaagttaagttcctcggcatacacattactgacaaactgaaattgtctacccacacagacagtgtggtgaagaaggcgcaacagtgtctctttaacctcaggaggctgatgaaatttgtcttgtcacctacAAACATACtcttttacagatgtacaattgagagcatcctgttgggctgtatcaccgcctagtaCTGCAACTGCGCCGCCCACAACCGCTGGGTTCTCCagatgtctctgaatgtccttgagtggcccagcctgaaCCCGGACTTGCGCCccattgaacatctctggagagacctgaatatagctgtgcagcgatgctccccattgaacccgacagagcttgacaagatctgcagagaagaatggaagaaactccccaaatacaggtgtgccaagcttgtagcatcatacccaagaagactcaaggctgtaatcgctgctaaaggtgcttcaacaaagtactgaataaagggtctgaatacttatgtaaatgtgatatttcacttttgtattttttatacatttgcaaaaaaaatcaaacaacctgtttttgctttgtcattatggggtattgtgtgtagattgatgaggtaaaaaaaactattaaatccattttagaaaaatgctgtaacgtaacaaaatgtggaaaaagtgaaggtgtctgagtactttccaaatgcactgtatgtcaccATATAGCTCagcatttgtattatttattttatagtattATTTTCTTATCTTTATGAacttacacatatggaatcatgtagtaaacaaaataagtgttaaacaaatcaatactttgatgacagctttgcacactcatagcattctctcaaccagcttcccctggaatgcatttccaacagtcttgaaggcgttcccacatatgttgtgcacttgttggctgcttttccttcactctgcggtccaactcatcccaaaccatctaaattgggttgaggtcgggtgattgtggatgccaggtcatctaatgcagcactccatcactctcccccatttctccttcacccaaatccagatagctgattttctgaaagagctgcaaaatctggacccctacaaatcagccgggctagacaatctgggccctctctttctaaaatgagctgccaaaattgttgcaacccctattactagcctgttcaacctctctttcatattgtctgagattcccaaagattggaaagctgccacggtcatccccctgttcaaagggggagacactctagacccaaactgctacagacctgtatctatcctaccctgcatttctaaggtcttcgaaagcgaagttaacaaacagattaccgaccatttcgaatcccaccgtaccttctcctctatgcaatctggtttcagagctggtgcacctcagccatgctcaaagTACTAAAAGTACTAAAagtactaaatgatatcataacctccatcgataagagacaaggctttcgactctgtcaatcaccacattcttatcggcagactcaacagccttggtttctcaaatgattgcctcgcctggttcaccaactactcttctgatagagttcagtgtgtcaaatcggagggcttgttgtccggacctctggcagtcgctatgagggtgccacagggttcaattctcgggccgactctcttctctgtatacatcaatgatgtccaAGATGTAAAACTTCTTGGTgaaagggggcagtattttcaagtccagatgaaatgcatgcccaaattcaactgcctgctactcatccccagaaaataagatatgcatattattagtattgaatagaaaacactctgaagtttctaaaacggtttgaatcatgtctgtgagtaaaacagaacttatgtagcaggcgaaacccttAGGAAAAAACattcagatttttattttttgaggtcactctcttttcaatacgttttcattgggaatcgagatttctaagggaccttcatgcagttcctaccgcttccaatggatgtcaccagtctttagaaattggttgaggtttttcctttgtgtaatgaagaagtagccctgttcaaaacgagggtcacttcaagtgtactgttagatagaggcgcgtgaccagaaaggtagcatcagtttgttttcttcctgtatggaaaacagatcatcccgtcttcaattttatcgattatttactttaaaaaatacctaaagttgtattacaaaagtagtttgaaatgttttggcaaagtttacaggtaacttttgacatatattgtagtgacgttgcgcaatttggaacaggtgtttttctggatcaaacgcgctaaataaatggacattttggatatatatcgacggaactaatcgaacaaaaggaccctTTGTTTATTGAGGTGCtaccctcagataatagcattgtttgcttttgccgaaaagcatttttgaaatgttggctggattcacaacacgtgtagctttaatttggtatcttacatatgtgatttcatgaaagttagatttttatagtaatttcattttgttccataaagattatttttagatccaaaatacctccgtttgtttgtcgcgttatgttcagaaatccacaggaaagagcggtcatgacaacgcagacgaaaattccaaatagtttccataatgtccacagaaacatgtcaaacgttttttataatcaaatcctcaggttgtttttaaaatatataatcgataatatattaaccacaaatgtctttcacagtaggagagaggaaaacaatggctgtccaaattctgttgcgcaagcaaaactcatgtgaccacttgacgcaatgttatcgttctggctcatttttcaaaataaaagcctgaaactatgtctgaagactgttgacaccttgaggaagcgataggaaaaggaatctggttcatatccctttaaatccagcaaagggaggctatggaacatggagttttcaaaatagaagccacttcctgtttggattttcctcagggtttcgcctgcaatatcagttatgttatactcacagacaatattttgacaggtttggaaactttagagtgttttctatccaattctaataataatatgcatatattagcaactgagactgagagctggccgtttacaatgggcaccttttcatccaagctactcaatactgcccctgcagccataaaaagttacatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctagtaaaactgacaatcctaccgatcctcgtctttggcgatgtcatttacaaaatagcctccaacaatctactcaacaaattggatgcagtctatcacagttccATCTGTTctgtcaccaaaaccccatatactacccaccactgcgacctgtacgctctcgttgcctggcccttgcttcatactcgtcgccaaacccactggctccaggtcatctacaagtatctgctaggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcgctacagatatatctcactggtcacccccatagccaattcttcctttggctgcctttccttccagttctctgctaccaatgacaggaacgaactacaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagattaatgcacctgtacatagcccacctataatttagcccaaaaaactacctctttccctactgtattttatttattcatttattttgctcctttgcaccccattatttttatttctactttgcacattctcccattgcaaatctaccattccagtgttttacttgctatattgtatttactttgccaccatggcctttttgcctttacctcccttatctcacctcatttgctcacatcgtatataaacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatgtgtcgaactcaacttgcctacctggttaaataaaggtgaaaaaataaaaagaaattgcacaaaggagatgtcctaaccgacttgtcaaaactatagtttgttaacaagaaatttgtggttgaaaaactaattttaatgactccaacctaagtgaatgtaaacatccga
>TU1764755
gctggattcacaacacgtgtagctttaatttggtatcttacatatgtgatttcatgaaagttagatttttatagtaatttcattttgttccataaagattatttttagatccaaaatacctccgtttgtttgtcgcgttatgttcagaaatccacaggaaagagcggtcatgacaacgcagacgaaaattccaaatagtttccataatgtccacagaaacatgtcaaacgttttttataatcaaatcctcaggttgtttttaaaatatataatcgataatatattaaccacaaatgtctttcacagtaggagagaggaaaacaatggctgtccaaattctgttgcgcaagcaaaactcatgtgaccacttgacgcaatgttatcgttctggctcatttttcaaaataaaagcctgaaactatgtctgaagactgttgacaccttgaggaagcgataggaaaaggaatctggttcatatccctttaaatccagcaaagggaggctatggaacatggagttttcaaaatagaagccacttcctgtttggattttcctcagggtttcgcctgcaatatcagttatgttatactcacagacaatattttgacaggtttggaaactttagagtgttttctatccaattctaataataatatgcatatattagcaactgagactgagagctggccgtttacaatgggcaccttttcatccaagctactcaatactgcccctgcagccataaaaagttacatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctagtaaaactgacaatcctaccgatcctcgtctttggcgatgtcatttacaaaatagcctccaacaatctactcaacaaattggatgcagtctatcacagttccATCTGTTctgtcaccaaaaccccatatactacccaccactgcgacctgtacgctctcgttgcctggcccttgcttcatactcgtcgccaaacccactggctccaggtcatctacaagtatctgctaggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcgctacagatatatctcactggtcacccccatagccaattcttcctttggctgcctttccttccagttctctgctaccaatgacaggaacgaactacaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagattaatgcacctgtacatagcccacctataatttagcccaaaaaactacctctttccctactgtattttatttattcatttattttgctcctttgcaccccattatttttatttctactttgcacattctcccattgcaaatctaccattccagtgttttacttgctatattgtatttactttgccaccatggcctttttgcctttacctcccttatctcacctcatttgctcacatcgtatataaacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatgtgtcgaactcaacttgcctacctggttaaataa
>TU1764752
ctttagagtgttttctatccaattctaataataatatgcatatattagcaactgagactgagagctggccgtttacaatgggcaccttttcatccaagctactcaatactgcccctgcagccataaaaagttacatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctagtaaaactgacaatcctaccgatcctcgtctttggcgatgtcatttacaaaatagcctccaacaatctactcaacaaattggatgcagtctatcacagttccATCTGTTctgtcaccaaaaccccatatactacccaccactgcgacctgtacgctctcgttgcctggcccttgcttcatactcgtcgccaaacccactggctccaggtcatctacaagtatctgctaggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcgctacagatatatctcactggtcacccccatagccaattcttcctttggctgcctttccttccagttctctgctaccaatgacaggaacgaactacaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagattaatgcacctgtacatagcccacctataatttagcccaaaaaacta
>TU1764758
ctttagagtgttttctatccaattctaataataatatgcatatattagcaactgagactgagagctggccgtttacaatgggcaccttttcatccaagctactcaatactgcccctgcagccataaaaagttacatctagaattggcttcctatttcgcaacaaagcatccttcactcatgctgccaaacataccctagtaaaactgacaatcctaccgatcctcgtctttggcgatgtcatttacaaaatagcctccaacaatctactcaacaaattggatgcagtctatcacagttccATCTGTTctgtcaccaaaaccccatatactacccaccactgcgacctgtacgctctcgttgcctggcccttgcttcatactcgtcgccaaacccactggctccaggtcatctacaagtatctgctaggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgcgctacagatatatctcactggtcacccccatagccaattcttcctttggctgcctttccttccagttctctgctaccaatgacaggaacgaactacaaaaatcactgaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagattaatgcacctgtacatagcccacctataatttagcccaaaaaactacctctttccctactgtattttatttattcatttattttgctcctttgcaccccattatttttatttctactttgcacattctcccattgcaaatctaccattccagtgttttacttgctatattgtatttactttgccaccatggcctttttgcctttacctcccttatctcacctcatttgctcacatcgtatataaacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatgtgtcgaactcaacttgcctacctggttaaataaaggtgaaaaaataaaaagaaattgcacaaaggagatgtcctaaccgacttgtcaaaactatagtttgttaacaagaaatttgtggttgaaaaactaattttaatgactccaacctaagtgaatgtaaacatccga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764753 False 5707 lncRNA 0.42 1 35512362 35518068
TU1764755 False 1621 lncRNA 0.40 1 35516313 35517933
TU1764752 False 703 lncRNA 0.46 1 35516932 35517634
TU1764758 True 1137 lncRNA 0.41 1 35516932 35518068

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 7726 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 78421 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 164067 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 187698 35237754 ~ 35324664 (+)
olah sast coding upstream 372528 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 371498 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 452989 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 481131 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 505825 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 564041 36076661 ~ 36091606 (+)
G1542053 NA non-coding upstream 4067 35505167 ~ 35508295 (+)
G1542051 LOC106588245 non-coding upstream 10298 35478835 ~ 35502933 (+)
G1542057 LOC106588245 non-coding upstream 67392 35431031 ~ 35444970 (+)
G1542071 NA non-coding upstream 76963 35428037 ~ 35435399 (+)
G1542062 NA non-coding downstream 385 35518453 ~ 35518827 (+)
G1542055 NA non-coding downstream 1338 35519406 ~ 35520066 (+)
G1542090 NA non-coding downstream 11475 35529543 ~ 35606179 (+)
G1542091 NA non-coding downstream 20398 35538466 ~ 35610705 (+)
G1542101 NA non-coding downstream 23391 35541459 ~ 35544343 (+)
G1542052 LOC106588245 other upstream 31014 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 125899 35373871 ~ 35386463 (+)
G1541989 NA other upstream 228656 35282603 ~ 35283706 (+)
mbpa LOC106588233 other upstream 613951 34883492 ~ 34898413 (+)
G1542253 NA other downstream 317768 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 318609 35836677 ~ 35837543 (+)
G1542262 NA other downstream 327746 35845814 ~ 35846196 (+)
G1542282 NA other downstream 352169 35870237 ~ 35870558 (+)

Expression


Co-expression Network