G1543148


Basic Information

Item Value
gene id G1543148
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35517139 ~ 35517936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1765964
cctttatttaaccaggtaggcaagttgagttcgacacatacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtttatatacgatgtgagcaaatgaggtgagataagggaggtaaaggcaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcaatgggagaatgtgcaaagtagaaataaaaataatggggtgcaaaggagcaaaataaatgaataaataaaatacagtagggaaagaggtagttttttgggctaaattataggtgggctatgtacaggtgcattaatctgtgagctgctctgacagctggtgcttaaagctagtgagggagatatgagtctccagcttcagtgatttttgtagttcgttcctgtcattggtagcagagaactggaaggaaaggcagccaaaggaagaattggctatgggggtgaccagtgagatatatctgtagcgcgtgctacgggtgggtgctgctatggtgaccagtgagctgagataaggtggggctttacctagcagatacttgtagatgacctggagccagtgggtttggcgacgagtatgaagcaagggccaggcaacgagagcgtacaggtcgcagtggtgggtagtatatggggttttggtgacagAACAGATggaactgtgatagactgcatccaatttgttgagtagattgttggaggctattttgtaaatgacatcgccaaagacgaggatcggtaggattgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1765964 True 798 lncRNA 0.43 1 35517139 35517936

Neighbor

gene id symbol gene type direction distance location
LOC110496088 NA coding downstream 9800 35500146 ~ 35507339 (-)
LOC118941140 NA coding downstream 17458 35492995 ~ 35499681 (-)
LOC118941141 NA coding downstream 28622 35485826 ~ 35488517 (-)
LOC118941139 NA coding downstream 33804 35478658 ~ 35483335 (-)
LOC118941143 LOC106588245 coding downstream 41033 35471584 ~ 35476106 (-)
LOC118941150 NA coding upstream 2187 35519535 ~ 35679900 (-)
LOC110496097 LOC105009768 coding upstream 200019 35717955 ~ 35721190 (-)
LOC110496098 LOC106588247 coding upstream 223416 35741352 ~ 35808050 (-)
LOC110496099 LOC106588248 coding upstream 291030 35808966 ~ 35816670 (-)
LOC110496100 LOC106588520 coding upstream 353749 35871685 ~ 35882464 (-)
G1543154 NA non-coding downstream 5154 35511472 ~ 35511985 (-)
G1543125 LOC106588245 non-coding downstream 15103 35478835 ~ 35502036 (-)
G1543133 NA non-coding downstream 16526 35492998 ~ 35500613 (-)
G1543163 NA non-coding downstream 25661 35484007 ~ 35491478 (-)
G1543161 NA non-coding downstream 31953 35477747 ~ 35485186 (-)
G1543265 NA non-coding upstream 234095 35752031 ~ 35752372 (-)
G1543285 NA non-coding upstream 325241 35843177 ~ 35843412 (-)
G1543288 NA non-coding upstream 342700 35860636 ~ 35860835 (-)
G1543291 NA non-coding upstream 351876 35869812 ~ 35870192 (-)
G1543128 LOC106588245 other downstream 12982 35452618 ~ 35504157 (-)
LOC110496085 NA other downstream 167477 35346895 ~ 35351655 (-)
LOC110496081 LOC106588241 other downstream 337111 35151351 ~ 35203984 (-)
G1542988 sast other downstream 378585 35137637 ~ 35138554 (-)
G1543346 LOC106588513 other upstream 493051 36010987 ~ 36012686 (-)
G1544806 NA other upstream 1783572 37301508 ~ 37302174 (-)
ppt1 LOC106588481 other upstream 2404219 37922153 ~ 37930745 (-)
LOC110496154 LOC106588291 other upstream 2629654 38121576 ~ 38152320 (-)
G1546053 NA other upstream 2647314 38165250 ~ 38214049 (-)

Expression


Co-expression Network