G1542090


Basic Information

Item Value
gene id G1542090
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 35529543 ~ 35606179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1764796
acagggagctgattttgataggcgagtacagactgcagagtggggtacagatctacagctcaacattaggtcagtctatgtcacagcacagggagcagattttgataggcgcgtacagactgcagagtgaggtaaaggtctacagctcaacactaggtcagtctatctcacagaacagggagctgattttgataggcgagtacagagtgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttggataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctctctctgcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatcttcaactcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtaaaggtctacagctcaacactaggtcagtctatctcacagaacaggtagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaaaattaggtcagtc
>TU1764799
acagggagctgattttgataggcgagtacagactgcagagtggggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagccTATCTCACAGTaaagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctctttcacagcacagggagcagattttgataggcgcgtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcactgcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcactgcacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaacgttaggtcagtctatctcactgcacagcacagggagctgattttgataggtgagaacagactgcagagtgaggtacagatctacagatcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggcacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgatttcgataggtgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctgtctcactgcacagcacagggagctgattttgataggtgagaacagactgcagattgaggtacagatctacagctcaaaattaggtcagtctatctcacagcacaggtagctgattttgataggcgagcacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatgtcacagcacagggagcagattttgataggcgcgtacagactgcagagtgaggtaaaggtctacagctcaacactaggtcagtctatctcacagaacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacaacagagggagctgattttgaaaggcgcgtacacactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatc
>TU1764801
gctcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggcacagatctacagctcaacattaggtcagtctatctcactgcacagggagctgattttgaaaggcgc
>TU1764800
aggtacatatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttggataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctctctctgcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatcttcaactcaacattaggtcagtctatctcacagcacagggagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttggataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttggataggtgagaacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacaacagagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgatttcgataggtgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctgtctcactgcacagcacagggagctgattttgataggtgagaacagactgcagattgaggtacagatctacagctcaacattaggtcagtctatgtcacagcacagggagcagattttgataggcgcgtacagactgcagagtgaggtaaaggtctacagctcaacactaggtcagtctatctcacagaacagggagctgattttgataggcgagtacagagtgcagagtgaggtacatatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagaacaggtagctgattttgataggcgagtacagactgcagagtgaggtacagatctacagctcaaaattaggtcagtctatctcacagcacagggagctgattttgataggtgagaacagactgcagagtgaggtacagatctacagctcaacattagctcagtctatctcactgcacaacagagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagtacagggagctgattttgaaaggcgagtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgatttttataggcgcgtacagactgcaaagtgaagtacatatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgtgtACAGACTGCAaaatgaggtacagatctacagctcaacattaggtcagtctatctcactgcacagcacagggagctgattttgataggcgcgtacagactgcagagtgaggtacagatctacagctcaacattaggtcagtctatctcacagcacagggagctgatttcgataggtgcgtacagactgcagagtgaggtacagatctacagctcaac

Function

NR:

description
PREDICTED: cysteine-rich, acidic integral membrane protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1764796 False 959 TUCP 0.47 3 35529543 35545979
TU1764799 False 1557 lncRNA 0.47 6 35529543 35606179
TU1764801 False 229 lncRNA 0.48 2 35534899 35568612
TU1764800 True 2076 lncRNA 0.47 6 35535329 35597029

Neighbor

gene id symbol gene type direction distance location
LOC118941148 NA coding upstream 24907 35441143 ~ 35504636 (+)
LOC118941149 NA coding upstream 95602 35412771 ~ 35433941 (+)
tomm40l LOC106588243 coding upstream 181248 35335048 ~ 35348295 (+)
LOC110496082 LOC106588242 coding upstream 204879 35237754 ~ 35324664 (+)
olah sast coding upstream 389709 35131761 ~ 35139834 (+)
LOC110496101 LOC106588519 coding downstream 283387 35889566 ~ 35908363 (+)
LOC110496105 LOC106588516 coding downstream 364878 35971057 ~ 35974902 (+)
LOC110496106 LOC106588513 coding downstream 393020 35999199 ~ 36021773 (+)
LOC110496108 LOC106588512 coding downstream 417714 36023893 ~ 36068107 (+)
LOC110496111 LOC106588509 coding downstream 475930 36076661 ~ 36091606 (+)
G1542055 NA non-coding upstream 9477 35519406 ~ 35520066 (+)
G1542062 NA non-coding upstream 10716 35518453 ~ 35518827 (+)
G1542056 NA non-coding upstream 11475 35512362 ~ 35518068 (+)
G1542053 NA non-coding upstream 21248 35505167 ~ 35508295 (+)
G1542051 LOC106588245 non-coding upstream 27479 35478835 ~ 35502933 (+)
G1542097 NA non-coding downstream 24875 35631054 ~ 35641177 (+)
G1542100 NA non-coding downstream 37039 35643218 ~ 35649719 (+)
G1542123 NA non-coding downstream 45988 35652167 ~ 35652814 (+)
G1542125 NA non-coding downstream 47401 35653580 ~ 35655697 (+)
G1542158 NA non-coding downstream 95441 35701620 ~ 35708671 (+)
G1542052 LOC106588245 other upstream 48195 35400723 ~ 35481348 (+)
G1542037 LOC106588244 other upstream 143080 35373871 ~ 35386463 (+)
G1541989 NA other upstream 245837 35282603 ~ 35283706 (+)
mbpa LOC106588233 other upstream 631132 34883492 ~ 34898413 (+)
G1542253 NA other downstream 229657 35835836 ~ 35836617 (+)
G1542254 yo84 other downstream 230498 35836677 ~ 35837543 (+)
G1542262 NA other downstream 239635 35845814 ~ 35846196 (+)
G1542282 NA other downstream 264058 35870237 ~ 35870558 (+)
G1542324 LOC106588514 other downstream 355022 35961201 ~ 35963705 (+)
G1542102 NA non-coding downstream 8199 35554178 ~ 35644509 (+)
G1542109 NA non-coding downstream 12083 35558062 ~ 35563652 (+)
G1542114 NA non-coding downstream 44307 35590286 ~ 35591065 (+)
G1542117 NA non-coding downstream 59623 35605602 ~ 35613417 (+)

Expression


Co-expression Network